@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0125: (2015-11-28 )
MAIVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKLCKQLIETLVESMGITVPVAIHLDHGHYDDALECIEVGYTSIMFDGSHLPVEENLEKAREVVAKAHAKGISVEAEVGTIGGEEDGIVGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPANWEGLDLDHLKKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQLAFCQATRDYAVEFNANEAEYMKKKLFDPRKFLKPGFDAITEAVEERIDVFGSANKA

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PH4_A_5(3C56)
ALF_HELPY
[Raw transfer]



TD4_B_10(3N9S)
?
[Raw transfer]



2FP_A_2(3ELF)
ALF_MYCTU
[Raw transfer]



2FP_A_2(3ELF)
ALF_MYCTU
[Raw transfer]



PH4_B_6(3C56)
ALF_HELPY
[Raw transfer]



PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_B_6(2ISV)
?
[Raw transfer]



PGH_A_4(2ISW)
?
[Raw transfer]



PGH_B_12(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_A_4(2ISW)
?
[Raw transfer]



PGH_A_5(2ISV)
?
[Raw transfer]



13P_A_5(2FJK)
ALF_THECA
[Raw transfer]



13P_A_8(3Q94)
?
[Raw transfer]



PGH_A_9(3C52)
ALF_HELPY
[Raw transfer]



FLC_B_6(4TO8)
?
[Raw transfer]



FLC_A_4(4TO8)
?
[Raw transfer]



G3P_A_4(3EKZ)
ALF_MYCTU
[Raw transfer]
21 PsiBlast_CBE 96.7345% -93 - C1 -4TO8 2.9 ?
1 PsiBlast_PDB 96.7345% -94 - C1 -4TO8 3.0 ?
5 PsiBlast_PDB 89.4438% -99 - C1 -3GAK - ? -
2 PsiBlast_PDB 89.0545% -81 - C1 -3Q94 4.3 ?
40 HHSearch 87.0841% -82 - C1 -2ISW 4.1 ?
29 PsiBlast_CBE 86.8938% -90 - C1 -2ISV 4.2 ?
6 PsiBlast_PDB 86.5138% -94 - C1 -2ISV 3.3 ?
7 PsiBlast_PDB 85.7738% -91 - C1 -2ISW 4.1 ?
42 HHSearch 85.5638% -86 - C1 -1GVF 3.5 KBAY_ECOLI
30 PsiBlast_CBE 85.2238% -86 - C1 -1GVF 3.9 KBAY_ECOLI
34 PsiBlast_CBE 85.1735% -85 - C1 -3N9R - ? -
8 PsiBlast_PDB 85.1637% -79 - C1 -2FJK 3.9 ALF_THECA
23 PsiBlast_CBE 85.0937% -81 - C1 -1RVG - ? -
12 PsiBlast_PDB 85.0735% -86 - C1 -3C56 4.6 ALF_HELPY
10 PsiBlast_PDB 85.0035% -91 - C1 -3C4U - ALF_HELPY -
24 PsiBlast_CBE 84.5337% -81 - C1 -1RVG - ? -
9 PsiBlast_PDB 84.4738% -91 - C1 -1GVF 3.5 KBAY_ECOLI
38 PsiBlast_CBE 84.3435% -88 - C1 -3C4U - ALF_HELPY -
64 Fugue 84.2537% -91 * C1 *1GVF 3.5 KBAY_ECOLI
36 PsiBlast_CBE 84.2135% -85 - C1 -3N9R - ? -
31 PsiBlast_CBE 83.9935% -83 - C1 -3N9S 5.6 ?
37 PsiBlast_CBE 83.7835% -86 - C1 -3C56 4.6 ALF_HELPY
11 PsiBlast_PDB 82.5135% -82 - C1 -3C52 4.2 ALF_HELPY
43 HHSearch 73.9731% -72 - C1 -3ELF 4.8 ALF_MYCTU