@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0363: (2016-01-01 )
MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFKR

Atome Classification :

(65 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(3UC5)
COAD_MYCTU
[Raw transfer]




COD_A_2(3PXU)
COAD_BURP1
[Raw transfer]




COA_A_2(3L92)
COAD_YERPE
[Raw transfer]




COD_J_10(1B6T)
COAD_ECOLI
[Raw transfer]




AGS_B_6(4NAU)
COAD_STAAW
[Raw transfer]




AGS_C_7(4NAU)
COAD_STAAW
[Raw transfer]




AGS_D_13(4NAH)
COAD_STAAW
[Raw transfer]




APC_D_9(3NBA)
COAD_MYCTU
[Raw transfer]




AGS_B_10(4NAH)
COAD_STAAW
[Raw transfer]




AGS_A_4(4NAU)
COAD_STAAW
[Raw transfer]




AGS_E_15(4NAH)
COAD_STAAW
[Raw transfer]




AGS_C_12(4NAH)
COAD_STAAW
[Raw transfer]




COA_B_11(3OTW)
COAD_HELPY
[Raw transfer]




AGS_F_16(4NAH)
COAD_STAAW
[Raw transfer]




ATP_A_4(1GN8)
COAD_ECOLI
[Raw transfer]




APC_A_5(3NBA)
COAD_MYCTU
[Raw transfer]




ATP_A_7(3ND6)
COAD_ENTFA
[Raw transfer]




ATP_F_12(3ND6)
COAD_ENTFA
[Raw transfer]




APC_C_8(3NBA)
COAD_MYCTU
[Raw transfer]




COA_A_8(3OTW)
COAD_HELPY
[Raw transfer]




COA_D_15(3OTW)
COAD_HELPY
[Raw transfer]




COA_E_18(3OTW)
COAD_HELPY
[Raw transfer]




ATP_B_6(1GN8)
COAD_ECOLI
[Raw transfer]




COA_F_19(3OTW)
COAD_HELPY
[Raw transfer]




COA_C_13(3OTW)
COAD_HELPY
[Raw transfer]




4PS_A_2(3K9W)
COAD_BURP1
[Raw transfer]




COA_A_7(1H1T)
COAD_ECOLI
[Raw transfer]




4PS_A_2(3K9W)
COAD_BURP1
[Raw transfer]




ADP_A_5(1O6B)
COAD_BACSU
[Raw transfer]




PPS_A_2(3F3M)
COAD_STAAW
[Raw transfer]




ADP_A_5(1O6B)
COAD_BACSU
[Raw transfer]




ADP_C_11(4NAT)
COAD_STAAW
[Raw transfer]




COA_D_8(3PNB)
COAD_MYCTU
[Raw transfer]




PNS_D_10(1VLH)
COAD_THEMA
[Raw transfer]




COA_B_6(3PNB)
COAD_MYCTU
[Raw transfer]




COA_C_7(3PNB)
COAD_MYCTU
[Raw transfer]




PNS_C_9(1VLH)
COAD_THEMA
[Raw transfer]




PNS_A_7(1VLH)
COAD_THEMA
[Raw transfer]




PNS_A_7(1VLH)
COAD_THEMA
[Raw transfer]




PNS_B_22(1QJC)
COAD_ECOLI
[Raw transfer]




PNS_B_8(1VLH)
COAD_THEMA
[Raw transfer]




COA_A_5(3PNB)
COAD_MYCTU
[Raw transfer]




PNS_B_8(1H1T)
COAD_ECOLI
[Raw transfer]




PNS_E_11(1VLH)
COAD_THEMA
[Raw transfer]




ADP_A_6(4NAT)
COAD_STAAW
[Raw transfer]




PNS_F_12(1VLH)
COAD_THEMA
[Raw transfer]




COA_A_2(3LCJ)
COAD_MYCTU
[Raw transfer]




COA_A_2(3RHS)
COAD_MYCTU
[Raw transfer]




ADP_B_9(4NAT)
COAD_STAAW
[Raw transfer]




FMT_A_2(3L93)
COAD_YERPE
[Raw transfer]




PNS_A_5(3NBK)
COAD_MYCTU
[Raw transfer]




PNS_A_2(1OD6)
COAD_THET8
[Raw transfer]




PNY_A_7(3ND7)
COAD_ENTFA
[Raw transfer]




PNS_A_5(3NBK)
COAD_MYCTU
[Raw transfer]




PNS_A_2(1OD6)
COAD_THET8
[Raw transfer]




PNS_B_7(3NBK)
COAD_MYCTU
[Raw transfer]




PNS_C_8(3NBK)
COAD_MYCTU
[Raw transfer]




2VJ_A_9(4NAH)
COAD_STAAW
[Raw transfer]




ACY_A_6(3NV7)
COAD_HELPY
[Raw transfer]




ACY_A_6(3NV7)
COAD_HELPY
[Raw transfer]




23 PsiBlast_CBE 94.2260%-139 - C2 -1GN8 7.0 COAD_ECOLI
3 PsiBlast_PDB 94.1960%-140 - C2 -1H1T 5.5 COAD_ECOLI
22 PsiBlast_CBE 93.9760%-140 - C2 -1H1T 3.8 COAD_ECOLI
8 PsiBlast_PDB 93.5059%-134 - C2 -3L93 2.9 COAD_YERPE
7 PsiBlast_PDB 93.4959%-137 - C2 -3L92 7.0 COAD_YERPE
101 Fugue 93.3759%-135 * C2 *1B6T - COAD_ECOLI -
1 PsiBlast_PDB 93.2660%-138 - C2 -1B6T - COAD_ECOLI -
2 PsiBlast_PDB 93.0560%-137 - C2 -1GN8 8.0 COAD_ECOLI
24 PsiBlast_CBE 92.9660%-136 - C2 -1B6T 8.9 COAD_ECOLI
4 PsiBlast_PDB 92.9160%-138 - C2 -1QJC - COAD_ECOLI -
21 PsiBlast_CBE 92.7160%-137 - C2 -1QJC 4.5 COAD_ECOLI
82 HHSearch 92.3759%-133 - C2 -1QJC - COAD_ECOLI -
85 HHSearch 92.0760%-140 - C2 -3K9W 4.8 COAD_BURP1
102 Fugue 90.8856%-139 - C2 -1B6T - COAD_ECOLI -
5 PsiBlast_PDB 90.7761%-140 - C2 -3K9W 4.8 COAD_BURP1
6 PsiBlast_PDB 89.8761%-145 - C2 -3PXU 9.5 COAD_BURP1
34 PsiBlast_CBE 88.3347%-142 - C2 -1VLH 4.2 COAD_THEMA
83 HHSearch 88.2047%-137 - C2 -1VLH 5.0 COAD_THEMA
37 PsiBlast_CBE 87.8647%-143 - C2 -1VLH 4.8 COAD_THEMA
36 PsiBlast_CBE 87.7347%-143 - C2 -1VLH 5.1 COAD_THEMA
35 PsiBlast_CBE 87.7347%-140 - C2 -1VLH 5.0 COAD_THEMA
9 PsiBlast_PDB 87.4652%-145 - C2 -1OD6 3.2 COAD_THET8
15 PsiBlast_PDB 87.4347%-140 - C2 -1VLH 5.0 COAD_THEMA
38 PsiBlast_CBE 87.4047%-139 - C2 -1VLH 4.5 COAD_THEMA
81 HHSearch 86.3752%-134 - C2 -1OD6 3.2 COAD_THET8
88 HHSearch 84.9343%-134 - C2 -1O6B 7.0 COAD_BACSU
11 PsiBlast_PDB 82.5549%-129 - C2 -3F3M 5.5 COAD_STAAW
12 PsiBlast_PDB 82.3149%-133 - C2 -4NAH 8.4 COAD_STAAW
31 PsiBlast_CBE 81.7249%-127 - C2 -4NAH 5.6 COAD_STAAW
44 PsiBlast_CBE 81.7143%-141 - C2 -3ND6 6.0 COAD_ENTFA
74 PsiBlast_CBE 81.6347%-137 - C2 -3OTW 8.8 COAD_HELPY
76 PsiBlast_CBE 81.6147%-138 - C2 -3OTW 9.1 COAD_HELPY
27 PsiBlast_CBE 81.5349%-131 - C2 -4NAT 4.2 COAD_STAAW
73 PsiBlast_CBE 81.3847%-134 - C2 -3OTW 9.5 COAD_HELPY
16 PsiBlast_PDB 81.3844%-125 - C2 -1O6B 5.5 COAD_BACSU
18 PsiBlast_PDB 81.3243%-140 - C2 -3ND6 6.4 COAD_ENTFA
14 PsiBlast_PDB 81.2849%-129 - C2 -4NAU 5.9 COAD_STAAW
13 PsiBlast_PDB 81.0249%-129 - C2 -4NAT 4.3 COAD_STAAW
55 PsiBlast_CBE 80.9640%-137 - C2 -3PNB 4.1 COAD_MYCTU
26 PsiBlast_CBE 80.9249%-130 - C2 -4NAU 6.9 COAD_STAAW
32 PsiBlast_CBE 80.8349%-126 - C2 -4NAH 6.2 COAD_STAAW
25 PsiBlast_CBE 80.7949%-128 - C2 -4NAU 6.7 COAD_STAAW
58 PsiBlast_CBE 80.7640%-137 - C2 -3NBK 2.5 COAD_MYCTU
86 HHSearch 80.6941%-134 - C2 -3NBK 3.0 COAD_MYCTU
75 PsiBlast_CBE 80.5847%-135 - C2 -3OTW 8.7 COAD_HELPY
60 PsiBlast_CBE 80.5640%-133 - C2 -3NBK 3.0 COAD_MYCTU
20 PsiBlast_PDB 80.5640%-138 - C2 -3LCJ 3.1 COAD_MYCTU
33 PsiBlast_CBE 80.5449%-127 - C2 -4NAH 6.7 COAD_STAAW
77 PsiBlast_CBE 80.5247%-135 - C2 -3OTW 9.6 COAD_HELPY
19 PsiBlast_PDB 80.5143%-141 - C2 -3ND7 2.8 COAD_ENTFA
54 PsiBlast_CBE 80.5040%-135 - C2 -3PNB 5.1 COAD_MYCTU
29 PsiBlast_CBE 80.4549%-129 - C2 -4NAH 6.1 COAD_STAAW
72 PsiBlast_CBE 80.2647%-135 - C2 -3OTW 8.4 COAD_HELPY
51 PsiBlast_CBE 80.2340%-134 - C2 -3RHS 2.8 COAD_MYCTU
53 PsiBlast_CBE 80.2140%-135 - C2 -3PNB 4.8 COAD_MYCTU
59 PsiBlast_CBE 79.9040%-134 - C2 -3NBK 3.1 COAD_MYCTU
56 PsiBlast_CBE 79.9040%-133 - C2 -3PNB 4.2 COAD_MYCTU
28 PsiBlast_CBE 79.3049%-126 - C2 -4NAT 3.9 COAD_STAAW
30 PsiBlast_CBE 78.6249%-122 - C2 -4NAH 5.9 COAD_STAAW
50 PsiBlast_CBE 78.0240%-129 - C2 -3UC5 6.7 COAD_MYCTU
64 PsiBlast_CBE 78.0140%-131 - C2 -3NBA 6.6 COAD_MYCTU
62 PsiBlast_CBE 77.8140%-131 - C2 -3NBA 6.0 COAD_MYCTU
87 HHSearch 76.8945%-146 - C2 -3NV7 3.5 COAD_HELPY
61 PsiBlast_CBE 76.7540%-131 - C2 -3NBA 6.1 COAD_MYCTU
71 PsiBlast_CBE 73.9547%-141 - C2 -3NV7 3.5 COAD_HELPY