@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4389: (2016-02-26 )
MQLKDKVIIITGGCQGLGRAMGEYLAGKGARLALVDLNRERLDEAVAACKAAGGDARAYVCNVADEEQVTHMVAQVASDFGAINGLVNNAGILRDGLTIKVKDGQLSKMSLAQWQSVIDVNLTGVFLCTREVAAKMIELKNEGAIVNISSISRAGNMGQANYSAAKAGVAADTVVWAKELARYGIRVAGVAPGFIETEMTAGMKPEALEKMTAGIPLKRMGKPVEIAHSVAYIFENDYYTGRVLELDGGLRL

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_C_8(4NBU)
?
[Raw transfer]




NAI_A_5(4NBU)
?
[Raw transfer]




NAI_D_9(4NBU)
?
[Raw transfer]




NAD_D_8(2PD6)
DHB8_HUMAN
[Raw transfer]




NAP_D_7(4JRO)
?
[Raw transfer]




NAP_A_3(4N5N)
PHBB_CUPNH
[Raw transfer]




NAP_B_6(4DMM)
?
[Raw transfer]




NAP_C_6(4JRO)
?
[Raw transfer]




NAP_D_8(4DMM)
?
[Raw transfer]




NDP_B_6(3SJ7)
?
[Raw transfer]




NDP_A_3(3SJ7)
?
[Raw transfer]




NAP_C_7(4DMM)
?
[Raw transfer]




NAP_A_6(3VZS)
PHBB_CUPNH
[Raw transfer]




NAP_B_9(3VZS)
PHBB_CUPNH
[Raw transfer]




NAP_B_4(4N5N)
PHBB_CUPNH
[Raw transfer]




CAA_B_7(4NBU)
?
[Raw transfer]




CAA_D_16(3VZS)
PHBB_CUPNH
[Raw transfer]




CAA_C_13(3VZS)
PHBB_CUPNH
[Raw transfer]




DIO_A_9(3VZP)
PHBB_CUPNH
[Raw transfer]




DIO_D_20(3VZP)
PHBB_CUPNH
[Raw transfer]




GOL_B_10(4N5M)
PHBB_CUPNH
[Raw transfer]




DIO_B_13(3VZP)
PHBB_CUPNH
[Raw transfer]




DIO_C_16(3VZP)
PHBB_CUPNH
[Raw transfer]




1PE_B_5(2PNF)
FABG_AQUAE
[Raw transfer]




EDO_A_11(3RRO)
FABG_VIBCH
[Raw transfer]




1PE_A_6(2PNF)
FABG_AQUAE
[Raw transfer]




EDO_B_22(3RRO)
FABG_VIBCH
[Raw transfer]




PEG_A_3(3OSU)
FABG_STAAM
[Raw transfer]




EDO_B_21(3RRO)
FABG_VIBCH
[Raw transfer]




PEG_A_11(3OSU)
FABG_STAAM
[Raw transfer]




PEG_B_17(3OSU)
FABG_STAAM
[Raw transfer]




PGE_A_8(3RRO)
FABG_VIBCH
[Raw transfer]




25 PsiBlast_CBE 89.1145% -93 - C1 -4NBW - ? -
26 PsiBlast_CBE 88.7245% -97 - C1 -4NBW - ? -
22 PsiBlast_CBE 88.5845% -98 - C1 -4NBU 9.4 ?
21 PsiBlast_CBE 88.5045% -96 - C1 -4NBU 9.7 ?
1 PsiBlast_PDB 88.2045% -97 - C1 -4NBU 11.4 ?
24 PsiBlast_CBE 87.3345% -92 - C1 -4NBW - ? -
23 PsiBlast_CBE 87.2745% -96 - C1 -4NBU 5.4 ?
105 PsiBlast_CBE 86.1636%-100 - C1 -2PD6 - DHB8_HUMAN -
71 PsiBlast_CBE 86.0637% -89 - C1 -4N5M 2.4 PHBB_CUPNH
101 PsiBlast_CBE 84.9636% -98 * C1 *4CQL - DHB8_HUMAN -
94 PsiBlast_CBE 84.7736% -97 - C1 -4CQM - DHB8_HUMAN -
76 PsiBlast_CBE 83.9738% -92 - C1 -3VZS 7.5 PHBB_CUPNH
92 PsiBlast_CBE 83.6636% -96 - C1 -4CQM - DHB8_HUMAN -
124 HHSearch 83.6035% -95 - C1 -3AWD - ? -
72 PsiBlast_CBE 83.5137% -90 - C1 -4N5M - PHBB_CUPNH -
103 PsiBlast_CBE 83.4636% -94 - C1 -2PD6 9.7 DHB8_HUMAN
96 PsiBlast_CBE 83.4136% -98 - C1 -4CQL - DHB8_HUMAN -
74 PsiBlast_CBE 83.4138% -92 - C1 -3VZS 2.9 PHBB_CUPNH
79 PsiBlast_CBE 83.1038% -89 - C1 -3VZP 2.0 PHBB_CUPNH
78 PsiBlast_CBE 83.0638% -92 - C1 -3VZP 2.2 PHBB_CUPNH
80 PsiBlast_CBE 82.9538% -89 - C1 -3VZP 2.2 PHBB_CUPNH
77 PsiBlast_CBE 82.7838% -92 - C1 -3VZP 2.5 PHBB_CUPNH
75 PsiBlast_CBE 82.5338% -88 - C1 -3VZS 7.7 PHBB_CUPNH
70 PsiBlast_CBE 81.9437% -91 - C1 -4N5N 4.6 PHBB_CUPNH
73 PsiBlast_CBE 81.3538% -88 - C1 -3VZS 4.5 PHBB_CUPNH
69 PsiBlast_CBE 80.8937% -89 - C1 -4N5N 3.5 PHBB_CUPNH
36 PsiBlast_CBE 79.0840% -85 - C1 -2PNF 2.2 FABG_AQUAE
50 PsiBlast_CBE 78.0036% -89 - C1 -3RRO 2.9 FABG_VIBCH
12 PsiBlast_PDB 77.5140% -83 - C1 -2PNF 1.9 FABG_AQUAE
11 PsiBlast_PDB 77.4739% -90 - C1 -3OSU 2.6 FABG_STAAM
18 PsiBlast_PDB 75.8136% -89 - C1 -3RRO 3.0 FABG_VIBCH
46 PsiBlast_CBE 74.6738% -87 - C1 -4JRO 10.2 ?
57 PsiBlast_CBE 74.6342% -94 - C1 -4DMM 10.4 ?
56 PsiBlast_CBE 74.2942% -92 - C1 -4DMM 8.8 ?
27 PsiBlast_CBE 74.0940% -87 - C1 -3SJ7 9.7 ?
55 PsiBlast_CBE 73.3842% -93 - C1 -4DMM 9.6 ?
2 PsiBlast_PDB 73.0140% -88 - C1 -3SJ7 8.6 ?
45 PsiBlast_CBE 71.8738% -83 - C1 -4JRO 9.1 ?