@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0173: (2015-11-29 )
MKSFCVKAPAKINLFLHVVEKKETGYHLIEGLFVFANLSNFLEIKVGEKDFRYDNPIVEFVNSELKISNKYNTVMRAVNLLLRHAPVRTKVTVKVVKNIPTSAGLGSGSSDAGAVIRTLGKLWKIDRPILNEIALSVGADVPASIDSKPVLVRGIGEELCYINKFSLPTNIVLAKPKKKFLSTPEVFSKYGGNFSKPIEWRDDTEKDLLKLLKETENDLQEIAISLVPEIRDVILALESQEGSILSRMSGSGVTCFGIFDSEENAKTAAVNIREKQPEWWVCDAQLIV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CDM_A_3(2V2Z)
ISPE_AQUAE
[Raw transfer]




V12_A_11(2V2V)
ISPE_AQUAE
[Raw transfer]




NVG_A_8(2V2Q)
ISPE_AQUAE
[Raw transfer]




CTN_A_3(2V34)
ISPE_AQUAE
[Raw transfer]




GVS_A_3(2VF3)
ISPE_AQUAE
[Raw transfer]




ADP_A_4(2V8P)
ISPE_AQUAE
[Raw transfer]




ADP_A_4(2V2Z)
ISPE_AQUAE
[Raw transfer]




15 PsiBlast_PDB 92.4329% -82 - C2 -2V8P 5.1 ISPE_AQUAE
16 PsiBlast_PDB 91.6029% -84 - C2 -2VF3 5.3 ISPE_AQUAE
22 HHSearch 91.3329% -83 - C2 -1UEK - ISPE_THET8 -
12 PsiBlast_PDB 91.2729% -83 - C2 -2V2V 6.7 ISPE_AQUAE
14 PsiBlast_PDB 91.1529% -83 - C2 -2V34 4.9 ISPE_AQUAE
24 HHSearch 91.0130% -95 - C2 -2WW4 - ISPE_ECOLI -
11 PsiBlast_PDB 90.7529% -85 - C2 -2V2Q 5.9 ISPE_AQUAE
6 PsiBlast_PDB 90.5230% -99 - C2 -1UEK - ISPE_THET8 -
13 PsiBlast_PDB 90.4329% -82 - C2 -2V2Z 8.4 ISPE_AQUAE
45 Fugue 86.7729% -71 - C2 -1UEK - ISPE_THET8 -
3 PsiBlast_PDB 85.2028% -67 - C2 -4ED4 - ? -
2 PsiBlast_PDB 84.4528% -66 - C2 -4DXL - ? -
4 PsiBlast_PDB 84.3728% -67 - C2 -4EMD - ? -
5 PsiBlast_PDB 80.4628% -65 - C2 -1OJ4 - ISPE_ECOL6 -
1 PsiBlast_PDB 78.8328% -71 - C2 -2WW4 - ISPE_ECOLI -
10 PsiBlast_PDB 77.0727% -64 - C2 -3PYG - ISPE_MYCTU -
8 PsiBlast_PDB 76.3027% -63 - C2 -3PYE - ISPE_MYCTU -
21 HHSearch 74.9326% -68 - C2 -3PYF - ISPE_MYCTU -
9 PsiBlast_PDB 73.6227% -62 - C2 -3PYF - ISPE_MYCTU -
7 PsiBlast_PDB 72.9127% -62 - C2 -3PYD - ISPE_MYCTU -