@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1352: (2016-03-24 )
MTNLPMNKLIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGVKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDATKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDH

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IPE_D_19(3PDE)
?
[Raw transfer]




GRG_A_3(2J1P)
GGPPS_SINAL
[Raw transfer]




GRG_A_3(2J1P)
GGPPS_SINAL
[Raw transfer]




IPE_B_9(4LFG)
?
[Raw transfer]




IPR_B_11(1RQJ)
ISPA_ECOLI
[Raw transfer]




IPE_B_7(4LFE)
?
[Raw transfer]




DMA_B_12(4GP2)
?
[Raw transfer]




IPE_B_10(3PDE)
?
[Raw transfer]




DMA_A_6(4GP2)
?
[Raw transfer]




PPV_A_3(3NPK)
?
[Raw transfer]




GOL_B_12(3M9U)
?
[Raw transfer]




GOL_B_5(4F62)
?
[Raw transfer]




GOL_C_16(3M9U)
?
[Raw transfer]




IPE_A_4(3WJO)
?
[Raw transfer]




DMA_A_3(4GP1)
?
[Raw transfer]




RIS_B_12(1RQJ)
ISPA_ECOLI
[Raw transfer]




RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]




POP_A_3(3OYR)
?
[Raw transfer]




DST_B_9(1RQI)
ISPA_ECOLI
[Raw transfer]




IPE_B_9(4LLT)
?
[Raw transfer]




DST_D_11(3OAB)
?
[Raw transfer]




GST_B_9(4LLS)
?
[Raw transfer]




IPE_B_7(3OYR)
?
[Raw transfer]




DST_D_6(3OAC)
?
[Raw transfer]




DST_D_11(3KRF)
?
[Raw transfer]




IPE_C_18(3Q1O)
?
[Raw transfer]




IPE_D_24(3Q1O)
?
[Raw transfer]




IPE_A_6(3PDE)
?
[Raw transfer]




IPE_B_13(3Q1O)
?
[Raw transfer]




IPE_A_7(3Q1O)
?
[Raw transfer]




6H6_A_4(3ZMB)
?
[Raw transfer]




IPE_B_13(3PDE)
?
[Raw transfer]




IPE_D_22(3PDE)
?
[Raw transfer]




DST_D_11(3KRO)
?
[Raw transfer]




6H6_B_6(3ZMB)
?
[Raw transfer]




6H6_B_8(3ZOU)
?
[Raw transfer]




70 HHSearch 99.4899%-103 - C1 -1RTR - ? -
1 PsiBlast_PDB 99.4899%-103 - C1 -1RTR - ? -
76 HHSearch 68.9641% -75 - C1 -3UCA - ? -
12 PsiBlast_PDB 68.0640% -65 - C1 -1RQJ - ISPA_ECOLI -
13 PsiBlast_PDB 67.8740% -67 - C1 -1RQI - ISPA_ECOLI -
81 HHSearch 67.8640% -75 - C1 -2J1P 7.8 GGPPS_SINAL
37 PsiBlast_CBE 67.8440% -67 - C1 -1RQI 3.1 ISPA_ECOLI
73 HHSearch 65.9441% -56 - C1 -1RQJ 4.0 ISPA_ECOLI
80 HHSearch 65.9345% -74 - C1 -3P8L - ? -
35 PsiBlast_CBE 65.8140% -64 - C1 -1RQJ 4.9 ISPA_ECOLI
75 HHSearch 65.7740% -80 - C1 -3TS7 - ? -
23 PsiBlast_CBE 65.6041% -82 - C1 -4KKM - ? -
71 HHSearch 65.5938% -71 - C1 -3PDE 3.3 ?
15 PsiBlast_PDB 64.9040% -72 - C1 -2FOR - ? -
40 PsiBlast_CBE 64.1540% -73 - C1 -2FOR - ? -
79 HHSearch 64.1336% -72 - C1 -3LOM - ? -
4 PsiBlast_PDB 63.8741% -77 - C1 -4KKM - ? -
77 HHSearch 62.7936% -72 - C1 -3LSN - ? -
72 HHSearch 62.7637% -74 * C1 *2H8O - ? -
3 PsiBlast_PDB 61.9942% -71 - C1 -3UCA - ? -
24 PsiBlast_CBE 61.2043% -88 - C1 -4F62 2.4 ?
27 PsiBlast_CBE 60.2141% -73 - C1 -3M9U 2.3 ?
25 PsiBlast_CBE 59.1341% -69 - C1 -3PDE 5.1 ?
34 PsiBlast_CBE 58.8941% -58 - C1 -4LLS 5.2 ?
28 PsiBlast_CBE 58.8241% -68 - C1 -3M9U 2.6 ?
33 PsiBlast_CBE 57.7241% -56 - C1 -4LLT 3.4 ?
26 PsiBlast_CBE 57.5941% -68 - C1 -3PDE 4.9 ?
39 PsiBlast_CBE 57.0341% -69 - C1 -3ZMB 3.6 ?
38 PsiBlast_CBE 56.4541% -69 - C1 -3ZOU 2.4 ?
14 PsiBlast_PDB 56.3241% -71 - C1 -3ZMB 3.5 ?
86 HHSearch 54.2735% -63 - C1 -3NPK 3.5 ?
32 PsiBlast_CBE 53.9042% -56 - C1 -3KRF 2.9 ?
31 PsiBlast_CBE 53.8842% -56 - C1 -3KRO 3.0 ?
30 PsiBlast_CBE 53.0242% -58 - C1 -3OAB 2.8 ?
17 PsiBlast_PDB 52.5842% -73 - C1 -2J1P 7.8 GGPPS_SINAL
21 PsiBlast_CBE 52.0249% -57 - C1 -4LFG 5.2 ?
29 PsiBlast_CBE 51.3842% -56 - C1 -3OAC 2.9 ?
22 PsiBlast_CBE 50.3449% -57 - C1 -4LFE 5.2 ?
50 PsiBlast_CBE 45.8831% -62 - C1 -3WJO 2.5 ?
44 PsiBlast_CBE 44.6937% -50 - C1 -3Q1O 3.9 ?
45 PsiBlast_CBE 44.5237% -52 - C1 -3Q1O 4.0 ?
19 PsiBlast_PDB 44.4537% -50 - C1 -3Q1O 4.1 ?
43 PsiBlast_CBE 43.3337% -51 - C1 -3Q1O 3.9 ?
52 PsiBlast_CBE 31.8133% -41 - C1 -3OYR 3.4 ?
54 PsiBlast_CBE 29.1831% -40 - C1 -4GP2 3.7 ?
53 PsiBlast_CBE 27.9131% -44 - C1 -4GP2 4.8 ?
55 PsiBlast_CBE 27.4131% -41 - C1 -4GP1 4.4 ?