@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0432: (2016-03-15 )
MTIKNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVEKLEKIVQTIKANSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIRTVTIYPAAINTELLETITDKETEQGMTSLYKQYGITPDRIASIVAYAIDQPEDVNVNEFTVGPTSQPW

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_C_9(2JAP)
?
[Raw transfer]




NDP_D_11(2JAP)
?
[Raw transfer]




NAP_A_5(3P19)
?
[Raw transfer]




NDP_B_7(2JAP)
?
[Raw transfer]




NAP_D_8(3P19)
?
[Raw transfer]




NDP_A_5(2JAP)
?
[Raw transfer]




NDP_A_5(2JAH)
?
[Raw transfer]




NAP_C_7(3P19)
?
[Raw transfer]




NAP_C_7(3RKU)
YM71_YEAST
[Raw transfer]




NAP_B_6(3RKU)
YM71_YEAST
[Raw transfer]




NAD_K_11(1GCO)
DHG_BACME
[Raw transfer]




NAD_K_11(1G6K)
DHG_BACME
[Raw transfer]




NAP_B_6(3P19)
?
[Raw transfer]




NAD_L_12(1G6K)
DHG_BACME
[Raw transfer]




NAD_O_15(1GCO)
DHG_BACME
[Raw transfer]




NAD_M_13(1GCO)
DHG_BACME
[Raw transfer]




NAD_K_11(1GEE)
DHG_BACME
[Raw transfer]




NAD_J_10(1G6K)
DHG_BACME
[Raw transfer]




NAP_A_5(3RKU)
YM71_YEAST
[Raw transfer]




NAP_D_8(3RKU)
YM71_YEAST
[Raw transfer]




NAD_J_10(1GEE)
DHG_BACME
[Raw transfer]




NAD_I_9(1G6K)
DHG_BACME
[Raw transfer]




NAD_L_12(1GEE)
DHG_BACME
[Raw transfer]




NAD_I_9(1GEE)
DHG_BACME
[Raw transfer]




NAD_I_9(1GEE)
DHG_BACME
[Raw transfer]




NAD_O_15(1RWB)
DHG_BACME
[Raw transfer]




NAD_I_9(1GCO)
DHG_BACME
[Raw transfer]




NAD_I_9(1RWB)
DHG_BACME
[Raw transfer]




NAD_K_11(1RWB)
DHG_BACME
[Raw transfer]




NAD_M_13(1RWB)
DHG_BACME
[Raw transfer]




GOL_A_9(3PK0)
?
[Raw transfer]




PEG_A_6(3OSU)
FABG_STAAM
[Raw transfer]




PEG_A_5(3PK0)
?
[Raw transfer]




22 PsiBlast_CBE 89.9144%-111 - C1 -3TFO - ? -
21 PsiBlast_CBE 87.0144%-107 - C1 -3TFO - ? -
23 PsiBlast_CBE 85.4438% -97 - C1 -3P19 14.0 ?
1 PsiBlast_PDB 85.0638% -95 - C1 -3P19 14.2 ?
38 PsiBlast_CBE 83.7536% -92 - C1 -2JAP 14.0 ?
14 PsiBlast_PDB 83.5736% -92 - C1 -2JAP 14.2 ?
135 HHSearch 83.2235% -93 - C1 -2JAH 14.3 ?
37 PsiBlast_CBE 82.7836% -91 - C1 -2JAP 14.3 ?
39 PsiBlast_CBE 82.7736% -94 - C1 -2JAP 14.0 ?
29 PsiBlast_CBE 80.4533%-107 - C1 -3RKR - ? -
25 PsiBlast_CBE 79.5438%-105 - C1 -3P19 13.6 ?
31 PsiBlast_CBE 79.1433%-107 - C1 -3RKR - ? -
3 PsiBlast_PDB 78.3933%-104 - C1 -3RKR - ? -
24 PsiBlast_CBE 78.2738%-101 - C1 -3P19 13.7 ?
30 PsiBlast_CBE 77.6533%-102 - C1 -3RKR - ? -
7 PsiBlast_PDB 77.2433% -95 - C1 -3TN7 - ? -
33 PsiBlast_CBE 76.0033% -92 - C1 -3TN7 - ? -
123 HHSearch 74.8627% -94 - C1 -1XG5 - DHR11_HUMAN -
11 PsiBlast_PDB 74.6130%-102 - C1 -2BD0 - SPRE_CHLTE -
12 PsiBlast_PDB 73.9933% -92 - C1 -2UVD - ? -
28 PsiBlast_CBE 73.6234% -94 - C1 -3RKU 12.3 YM71_YEAST
2 PsiBlast_PDB 73.3134% -92 - C1 -3RKU 12.2 YM71_YEAST
26 PsiBlast_CBE 72.8334% -94 - C1 -3RKU 11.5 YM71_YEAST
27 PsiBlast_CBE 72.3434% -92 - C1 -3RKU 12.3 YM71_YEAST
130 HHSearch 68.7831% -93 - C1 -1GEE 7.9 DHG_BACME
53 PsiBlast_CBE 68.3633% -92 - C1 -1GEE 7.8 DHG_BACME
57 PsiBlast_CBE 68.2433% -92 - C1 -1GCO 10.7 DHG_BACME
55 PsiBlast_CBE 68.2333% -91 - C1 -1GEE 7.5 DHG_BACME
56 PsiBlast_CBE 68.1733% -91 - C1 -1GCO 10.6 DHG_BACME
52 PsiBlast_CBE 68.1533% -90 - C1 -1GEE 7.3 DHG_BACME
76 PsiBlast_CBE 68.0533% -97 - C1 -1G6K 9.7 DHG_BACME
75 PsiBlast_CBE 68.0433% -95 - C1 -1G6K 9.4 DHG_BACME
54 PsiBlast_CBE 67.9433% -91 - C1 -1GEE 7.8 DHG_BACME
59 PsiBlast_CBE 67.8433% -91 - C1 -1GCO 6.9 DHG_BACME
88 PsiBlast_CBE 67.7033% -93 - C1 -1RWB 8.9 DHG_BACME
77 PsiBlast_CBE 67.7033% -95 - C1 -1G6K 9.6 DHG_BACME
78 PsiBlast_CBE 67.6033% -94 - C1 -1G6K 9.2 DHG_BACME
87 PsiBlast_CBE 67.5333% -92 - C1 -1RWB 8.3 DHG_BACME
85 PsiBlast_CBE 67.4933% -92 - C1 -1RWB 7.9 DHG_BACME
86 PsiBlast_CBE 67.1233% -94 - C1 -1RWB 9.0 DHG_BACME
58 PsiBlast_CBE 67.0833% -90 - C1 -1GCO 10.7 DHG_BACME
8 PsiBlast_PDB 61.3630% -85 - C1 -3PK0 2.7 ?
6 PsiBlast_PDB 59.9834% -88 - C1 -3OSU 2.4 FABG_STAAM