Atome 2 : Comparative Modeling, Annotation & Complexes Prediction of Study :
MS2MDL_PROTEASOME (2020 - Homo sapiens - Human Proteases)
Download :
Data.csv
|
3D Common Core
|
3D Models
Tab legend :
Full name of ligand selected in the comparative docking column:
General color information :
Quality: [
Good
|
Correct
| Uncertain ]
Query
Structural Alignment (SA)
3D Modeling
Annotation
Ligands from PDB templates
Predicted Complexes
- pKd:[
‹nMol
|
‹μMol
|
‹mMol
]
Query Sequence
Filter:
Significants
SA found
Seq Ident.
3D Core
(QMean Score)
Classification code
Uniprot
Pfam
Prosite
Smart
Cath
ECNumber
Binding Site
Ligands Found
(Procognate)
Profile
Complexes by comparative docking
(ligands from PDB templates)
ALL
ADP - [nb=85] --> ADENOSINE-5'-DIPHOSPHATE
FAD - [nb=28] --> .....AVIN-ADENINE DINUCLEOTIDE
ANP - [nb=16] --> .....ONIC ACID-ADENYLATE ESTER
HEM - [nb=16] --> .....ORPHYRIN IX CONTAINING FE
GOL - [nb=14] --> GLYCEROL
2PG - [nb=14] --> 2-PHOSPHOGLYCERIC ACID
MES - [nb=12] --> .....LINO)-ETHANESULFONIC ACID
GDP - [nb=12] --> GUANOSINE-5'-DIPHOSPHATE
CDL - [nb=11] --> CARDIOLIPIN
5GP - [nb=10] --> .....UANOSINE-5'-MONOPHOSPHATE
EDO - [nb=8] --> 1,2-ETHANEDIOL
AMP - [nb=8] --> ADENOSINE MONOPHOSPHATE
PEP - [nb=7] --> PHOSPHOENOLPYRUVATE
3PG - [nb=7] --> 3-PHOSPHOGLYCERIC ACID
STU - [nb=6] --> STAUROSPORINE
ATP - [nb=6] --> ADENOSINE-5'-TRIPHOSPHATE
TDP - [nb=6] --> THIAMIN DIPHOSPHATE
NAD - [nb=5] --> .....MIDE-ADENINE-DINUCLEOTIDE
PGA - [nb=5] --> ..... (2-PHOSPHOGLYCOLIC ACID)
NDP - [nb=5] --> .....NE-DINUCLEOTIDE PHOSPHATE
HXC - [nb=5] --> HEXANOYL-COENZYME A
PAH - [nb=5] --> .....PHONOACETOHYDROXAMIC ACID
URE - [nb=5] --> UREA
COA - [nb=5] --> COENZYME A
UDP - [nb=4] --> URIDINE-5'-DIPHOSPHATE
IMH - [nb=4] --> .....POXANTHIN-9-YL)-D-RIBITOL
NAP - [nb=4] --> .....NE-DINUCLEOTIDE PHOSPHATE
DIH - [nb=3] --> .....7-YLMETHYL)-PYRROLIDINIUM
GLU - [nb=3] --> GLUTAMIC ACID
GTP - [nb=3] --> GUANOSINE-5'-TRIPHOSPHATE
OHH - [nb=3] --> .....2-OXOETHYLPHOSPHONIC ACID
NSS - [nb=3] --> .....GINYL)SULFAMOYL]ADENOSINE
A3P - [nb=3] --> .....ENOSINE-3'-5'-DIPHOSPHATE
398 - [nb=3] --> .....YL-PYRAZOLE-3-CARBOXAMIDE
N6P - [nb=3] --> .....-ribofuranosyl)-9H-purine
PLL - [nb=3] --> .....LLADIUM(II) ALLYL COMPLEX
ACO - [nb=3] --> ACETYL COENZYME *A
3PH - [nb=3] --> .....L-GLYCEROL-3-SN-PHOSPHATE
4CT - [nb=3] --> .....YL]METHYL}PYRROLIDIN-3-OL
P16 - [nb=3] --> .....2,3-D]PYRIMIDIN-7(8H)-ONE
TH3 - [nb=3] --> .....TA2 PALMITENOYL-COENZYMEA
IHP - [nb=3] --> INOSITOL HEXAKISPHOSPHATE
43B - [nb=3] --> .....]AMINO}BENZENESULFONAMIDE
NAI - [nb=3] --> .....MIDE ADENINE DINUCLEOTIDE
GNP - [nb=3] --> .....ONIC ACID-GUANYLATE ESTER
POP - [nb=3] --> PYROPHOSPHATE 2-
AOV - [nb=2] --> ADP ORTHOVANADATE
T3P - [nb=2] --> THYMIDINE-3'-PHOSPHATE
4NG - [nb=2] --> .....idin-3-yl]phosphonic acid
AGS - [nb=2] --> .....ORIC ACID-ADENYLATE ESTER
7A6 - [nb=2] --> .....thyl]pyrrolidine-3,4-diol
AR6 - [nb=2] --> .....HORYL] HYDROGEN PHOSPHATE
BES - [nb=2] --> .....)-4-METHYL-PENTANOIC ACID
MTH - [nb=2] --> .....TETRAHYDRO-FURAN-3,4-DIOL
CAA - [nb=2] --> ACETOACETYL-COENZYME A
XSP - [nb=2] --> .....OSPHONOOXY)PROPANOIC ACID
5TX - [nb=2] --> .....idin-3-yl)phosphonic acid
CIT - [nb=2] --> CITRIC ACID
6BM - [nb=2] --> .....idin-3-yl]phosphonic acid
IU1 - [nb=2] --> .....rrolidin-1-yl)ethan-1-one
GUN - [nb=2] --> GUANINE
TPP - [nb=2] --> THIAMINE DIPHOSPHATE
DG2 - [nb=2] --> .....,3-DIPHOSPHOGLYCERIC ACID
ADN - [nb=2] --> ADENOSINE
PGH - [nb=2] --> .....PHOGLYCOLOHYDROXAMIC ACID
EA2 - [nb=2] --> AMINOETHANOLPYROPHOSPHATE
6CG - [nb=2] --> .....hosphono-5'-thioguanosine
6C6 - [nb=2] --> .....5'-(DIHYDROGEN PHOSPHATE)
F3Q - [nb=2] --> .....oindolizine-1-carboxamide
12P - [nb=2] --> DODECAETHYLENE GLYCOL
B4P - [nb=2] --> .....NOSINE)-5'-TETRAPHOSPHATE
0J9 - [nb=2] --> .....O[3,4-D]PYRIMIDIN-4-AMINE
MYA - [nb=2] --> TETRADECANOYL-COA
NBS - [nb=1] --> ..... ADENOSINE-5'-DIPHOSPHATE
OOQ - [nb=1] --> .....umyl]-4-methyl-pentanoate
4AD - [nb=1] --> .....DENOSINE-5'-MONOPHOSPHATE
22A - [nb=1] --> .....OLO[3,2-D]PYRIMIDIN-4-ONE
523 - [nb=1] --> .....TRAHYDROGEN TRIPHOSPHATE)
IPA - [nb=1] --> ISOPROPYL ALCOHOL
DRX - [nb=1] --> .....-OXOETHYL]PHOSPHONIC ACID
DRO - [nb=1] --> .....1H-PYRAZOLE-3-CARBOXAMIDE
DMS - [nb=1] --> DIMETHYL SULFOXIDE
7KE - [nb=1] --> .....xadiazol-5-yl]propan-1-ol
13P - [nb=1] --> .....DIHYDROXYACETONEPHOSPHATE
7KU - [nb=1] --> .....peridin-1-yl}propan-1-one
AMO - [nb=1] --> .....DENOSINE-5'-MONOPHOSPHATE
AD9 - [nb=1] --> ADP METAVANADATE
6K6 - [nb=1] --> .....5'-(DIHYDROGEN PHOSPHATE)
NB8 - [nb=1] --> .....ROXY)PHOSPHORYL]ADENOSINE
0JE - [nb=1] --> .....ZOL-4-YL]-1,1-DIETHYLUREA
NOS - [nb=1] --> INOSINE
FPU - [nb=1] --> .....-2-PHENYLCYCLOPROPYL]UREA
AKG - [nb=1] --> 2-OXOGLUTARIC ACID
PP1 - [nb=1] --> .....3,4-D]PYRIMIDIN-4-YLAMINE
1XJ - [nb=1] --> .....PHENYL)SULFONYL]BENZAMIDE
TAM - [nb=1] --> .....HYDROXYETHYL)AMINOMETHANE
8W6 - [nb=1] --> .....amido)propyl)benzoic acid
ADE - [nb=1] --> ADENINE
FMC - [nb=1] --> FORMYCIN
OS5 - [nb=1] --> .....yl}methyl)pyrrolidin-3-ol
LIU - [nb=1] --> .....LPIPERIDIN-1-YL)BENZAMIDE
MTM - [nb=1] --> .....THYL]PYRROLIDINE-3,4-DIOL
3OD - [nb=1] --> .....RAHYDROFURAN-3-YL ACETATE
7DG - [nb=1] --> 7-DEAZAGUANINE
AZN - [nb=1] --> ALIZARIN RED
A8L - [nb=1] --> .....iperidin-1-yl)ethan-1-one
1NQ - [nb=1] --> .....IOPHENE-2,5-DICARBOXAMIDE
L1G - [nb=1] --> .....L-1H-INDOLE-2-CARBOXAMIDE
OS6 - [nb=1] --> .....yl}methyl)pyrrolidin-3-ol
1DT - [nb=1] --> .....-B]PYRAZINE-7-CARBOXAMIDE
FMT - [nb=1] --> FORMIC ACID
4LH - [nb=1] --> .....hyl}phenyl)prop-2-enamide
XYQ - [nb=1] --> .....RAHYDROFURAN-2-YL ACETATE
KTP - [nb=1] --> .....XO-ETHYL)-PHOSPHONIC ACID
A8O - [nb=1] --> .....-pyrrol-1-yl}benzonitrile
G4Y - [nb=1] --> .....inden-1-yl]imidoformamide
MLA - [nb=1] --> MALONIC ACID
8OU - [nb=1] --> .....ido[4,3-d]pyrimidin-5-one
1NS - [nb=1] --> .....]PYRIMIDINE-6-CARBOXAMIDE
A2F - [nb=1] --> 2-FLUOROADENINE
ARG - [nb=1] --> ARGININE
3RT - [nb=1] --> .....]-1H-indazole-3,6-diamine
933 - [nb=1] --> .....-B]PYRAZINE-7-CARBOXAMIDE
6IA - [nb=1] --> .....DENOSINE-5'-MONOPHOSPHATE
FPX - [nb=1] --> .....TRIFLUOROMETHYL)BENZAMIDE
4DN - [nb=1] --> .....ol-4-yl)amino]propan-1-ol
AN2 - [nb=1] --> AMP PHOSPHORAMIDATE
MTA - [nb=1] --> .....XY-5'-METHYLTHIOADENOSINE
G54 - [nb=1] --> .....o-1H-inden-1-yl]cyanamide
7KF - [nb=1] --> .....olo[3,4-d]pyrimidin-5-one
H8H - [nb=1] --> .....-YLOXY)QUINAZOLIN-4-AMINE
8KX - [nb=1] --> .....]anthracene-2-sulfonamide
U5P - [nb=1] --> URIDINE-5'-MONOPHOSPHATE
FDA - [nb=1] --> .....VINE-ADENINE DINUCLEOTIDE
OAD - [nb=1] --> .....ENOSINE-5-DIPHOSPHORIBOSE
03B - [nb=1] --> .....PYRROLE-3-CARBOXYLIC ACID
8OR - [nb=1] --> .....ido[4,3-d]pyrimidin-5-one
A8F - [nb=1] --> .....iperidin-1-yl)ethan-1-one
CYT - [nb=1] --> .....-AMINOPYRIMIDIN-2(1H)-ONE
PE8 - [nb=1] --> .....PTAOXATRICOSANE-1,23-DIOL
79T - [nb=1] --> .....}-dimethyl-prop-2-enamide
1NR - [nb=1] --> .....]PYRIMIDINE-6-CARBOXAMIDE
C5P - [nb=1] --> CYTIDINE-5'-MONOPHOSPHATE
G4V - [nb=1] --> .....nzoxazin-4-yl}methanimine
3C9 - [nb=1] --> .....O[2,3-B]PYRAZIN-2-YL)UREA
OS2 - [nb=1] --> .....yl]methyl}pyrrolidin-3-ol
IU - [nb=1] --> .....OURIDINE-5'-MONOPHOSPHATE
7KV - [nb=1] --> .....pyridin-6-yl]propan-1-one
IM5 - [nb=1] --> .....OLO[3,2-D]PYRIMIDIN-4-ONE
7H4 - [nb=1] --> .....peridin-1-yl}propan-1-one
1Y1 - [nb=1] --> .....PHENYL}SULFONYL)BENZAMIDE
AFB - [nb=1] --> .....[F]OXACYCLOTRIDECIN-4-ONE
5S7 - [nb=1] --> .....ylmethyl)oxolane-3,4-diol
TDI - [nb=1] --> .....YL)METHYL]PYRROLIDIN-3-OL
ASP - [nb=1] --> ASPARTIC ACID
2FD - [nb=1] --> .....HYL-TETRAHYDRO-FURAN-3-OL
MPZ - [nb=1] --> .....YL)AMINO]PHENYL}BENZAMIDE
685 - [nb=1] --> .....,3-THIAZOLE-5-CARBOXAMIDE
129 - [nb=1] --> .....O)-ETHYL]-PHOSPHONIC ACID
7DQ - [nb=1] --> .....pyridazine-3-carbonitrile
L2G - [nb=1] --> .....L-1H-INDOLE-2-CARBOXAMIDE
STI - [nb=1] --> .....LAMINO)-PHENYL]-BENZAMIDE
G65 - [nb=1] --> Masitinib
3PY - [nb=1] --> 3-HYDROXYPYRUVIC ACID
OS3 - [nb=1] --> .....yl]methyl}pyrrolidin-3-ol
MI1 - [nb=1] --> .....1-YL}-3-OXOPROPANENITRILE
1XV - [nb=1] --> .....PHENYL]SULFONYL}BENZAMIDE
ACY - [nb=1] --> ACETIC ACID
50J - [nb=1] --> .....arbamoyl)phenyl]benzamide
2PE - [nb=1] --> NONAETHYLENE GLYCOL
BIG - [nb=1] --> .....yl)methyl]pyrrolidin-3-ol
9D9 - [nb=1] --> .....OROPENTYL)PHOSPHONIC ACID
3TE - [nb=1] --> .....,3-THIAZOL-2-YL]ACETAMIDE
FPW - [nb=1] --> .....DROPYRIDINE-3-CARBOXAMIDE
TEP - [nb=1] --> THEOPHYLLINE
67D - [nb=1] --> .....)-3H-imidazo[2,1-i]purine
HB4 - [nb=1] --> .....inden-1-yl]imidoformamide
477 - [nb=1] --> .....1H-INDOL-6-YL}PENTAN-3-OL
R1P - [nb=1] --> RIBOSE-1-PHOSPHATE
APR - [nb=1] --> .....ENOSINE-5-DIPHOSPHORIBOSE
4DL - [nb=1] --> .....ndazol-4-yl)amino]ethanol
19S - [nb=1] --> .....-B]PYRAZINE-7-CARBOXAMIDE
19R - [nb=1] --> .....-B]PYRAZINE-7-CARBOXAMIDE
IK1 - [nb=1] --> .....DOTHIOPHENE-3-CARBOXAMIDE
NIL - [nb=1] --> Nilotinib
ILE - [nb=1] --> ISOLEUCINE
7KG - [nb=1] --> .....rrolo[3,4-c]pyridin-3-one
PKZ - [nb=1] --> Palmitoyl-CoA
NCA - [nb=1] --> NICOTINAMIDE
37Q - [nb=1] --> .....DAZOL-6-YL}PROP-2-ENAMIDE
TSN - [nb=1] --> TRICHOSTATIN A
19Q - [nb=1] --> .....-B]PYRAZINE-7-CARBOXAMIDE
IZA - [nb=1] --> .....[4,5-F]ISOQUINOLINE-7-ONE
1E9 - [nb=1] --> .....3-NITROBENZENESULFONAMIDE
8W3 - [nb=1] --> .....amido)propyl)benzoic acid
DMA - [nb=1] --> DIMETHYLALLYL DIPHOSPHATE
7KX - [nb=1] --> .....n-4-yl)phenyl]propanamide
50H - [nb=1] --> .....-a]pyrazin-6-yl}benzamide
TR5 - [nb=1] --> .....AAZAACENAPHTHYLEN-3-AMINE
4DF - [nb=1] --> .....yl)pyrimidine-2,4-diamine
SRA - [nb=1] --> .....NE -5'-THIO-MONOPHOSPHATE
MSG - [nb=1] --> 7-METHYL-6-THIO-GUANOSINE
4DJ - [nb=1] --> .....in-4-yl}amino)propan-1-ol
EIP - [nb=1] --> .....-METHYL BUTYL DIPHOSPHATE
Targets
for screening
Sort by entries
[Nb of SA]
[Best Ident]
[Best Score]
Main Code
[Name]
[Number]
[Number]
Distribution of CDocking pKd
[Number]
50
BDH2_HUMAN
20
100%
0.52
-
C4_S1
15 -
(12)
1
2
/ - / -
1
51
PERM_HUMAN
23
100%
0.57
PF03098
C3_S1
23 -
(0)
2
- /
13
/
3
1
52
DHX30_HUMAN
26
42%
0.32
PF07717
C2_S1
10 -
(0)
2
- /
8
/ -
1
53
ADT2_HUMAN
15
90%
0.19
PF00153
C8_S1
28 -
(0)
2
- /
4
/
7
1
54
HS2ST_HUMAN
18
96%
0.43
PF00685
C3_S1
15 -
(12)
2
- /
2
/
1
1
55
THIK_HUMAN
22
100%
0.49
PF00108
C4_S1
7 -
(2)
5
- /
2
/ -
1
56
NIT2_HUMAN
21
89%
0.49
PF00795
C6_S1
1 -
(0)
1
- / - /
1
1
57
PSD11_HUMAN
20
100%
0.61
PF18055
C3_S1
3 -
(0)
1
- / - /
3
0
58
TBC9B_HUMAN
16
33%
0.14
PF00566
C1_S1
2 -
(0)
?
- / - / -
0
59
GFPT1_HUMAN
20
100%
0.33
PF01380
C2_S1
14 -
(0)
1
- / - /
1
0
60
ELMO1_HUMAN
13
75%
0.41
PF02181
C6_S1
2 -
(0)
1
- / - / -
0
61
PSB2_HUMAN
5
100%
0.51
PF00227
C1_S1
0 -
(0)
?
- / - / -
0
62
NPS3A_HUMAN
16
32%
0.24
-
C3_S1
2 -
(0)
?
- / - / -
0
63
ECHD1_HUMAN
20
27%
0.36
PF00378
C4_S1
3 -
(1)
?
- / - / -
0
64
RS3_HUMAN
16
100%
0.51
PF00189
C3_S1
0 -
(0)
?
- / - / -
0
65
UCHL5_HUMAN
20
100%
0.48
PF01088
C4_S1
3 -
(0)
2
- / - / -
0
66
PSA5_HUMAN
3
100%
0.56
PF10584
C6_S1
0 -
(0)
?
- / - / -
0
67
MANF_HUMAN
16
100%
0.63
PF10208
C6_S1
0 -
(0)
?
- / - / -
0
68
SBDS_HUMAN
16
100%
0.51
PF09377
C2_S1
2 -
(0)
?
- / - / -
0
69
RNH2A_HUMAN
20
100%
0.49
PF01351
C6_S1
1 -
(0)
1
- / - / -
0
70
RL6_HUMAN
11
96%
0.31
PF01159
C3_S1
1 -
(1)
?
- / - / -
0
71
RL5_HUMAN
2
21%
0.24
PF06441
C2_S1
4 -
(0)
?
- / - / -
0
72
TFG_HUMAN
15
27%
0.13
PF00569
C8_S1
0 -
(0)
?
- / - / -
0
73
P20D2_HUMAN
17
36%
0.43
PF01546
C7_S1
10 -
(0)
?
- / - / -
0
74
ADRM1_HUMAN
18
100%
0.56
PF16550
C1_S1
2 -
(0)
1
- / - / -
0
75
LIN7C_HUMAN
20
91%
0.30
PF00018
C1_S1
1 -
(0)
?
- / - / -
0
76
WDR92_HUMAN
14
22%
0.33
PF00400
C1_S1
0 -
(0)
?
- / - / -
0
77
LMNA_HUMAN
16
100%
0.11
PF00932
C2_S1
3 -
(0)
1
- / - / -
0
78
KIFC1_HUMAN
25
99%
0.28
PF00225
C3_S1
21 -
(0)
4
- /
18
/
3
0
79
CFDP1_HUMAN
0
23%
0.16
PF06872
C6_S1
1 -
(0)
?
- / - / -
0
80
STK19_HUMAN
0
42%
0.06
PF00475
C3_S1
8 -
(0)
?
- / - / -
0
81
ARGL1_HUMAN
1
28%
0.30
PF02321
C2_S1
0 -
(0)
?
- / - / -
0
82
RLA2_HUMAN
9
100%
0.66
PF06227
C6_S1
1 -
(0)
?
- / - / -
0
83
DHB4_HUMAN
21
100%
0.24
PF02036
C1_S1
2 -
(0)
1
- / - /
1
0
84
UBE3C_HUMAN
20
33%
0.15
PF00397
C1_S1
2 -
(0)
?
- / - / -
0
85
NAKD2_HUMAN
13
25%
0.18
PF01513
C5_S1
6 -
(5)
?
- / - / -
0
86
PSMD3_HUMAN
20
100%
0.42
PF08375
C1_S1
0 -
(0)
?
- / - / -
0
87
PSMD1_HUMAN
20
100%
0.43
PF18004
C1_S1
0 -
(0)
?
- / - / -
0
88
GAL3B_HUMAN
20
46%
0.45
PF01965
C4_S1
2 -
(0)
1
- / - / -
0
89
PLOD1_HUMAN
15
59%
0.50
PF03171
C5_S1
3 -
(2)
?
- / - / -
0
90
CD47_HUMAN
12
99%
0.17
PF08204
C3_S1
13 -
(0)
2
- / - / -
0
91
SERPH_HUMAN
20
99%
0.50
PF00079
C5_S1
0 -
(0)
?
- / - / -
0
92
RBBP7_HUMAN
20
99%
0.50
PF00400
C3_S1
3 -
(0)
3
- / - / -
0
93
ROA3_HUMAN
20
88%
0.32
PF00076
C5_S1
0 -
(0)
?
- / - / -
0
94
UBCP1_HUMAN
10
100%
0.45
PF00240
C1_S1
3 -
(0)
?
- / - / -
0
95
QKI_HUMAN
19
97%
0.30
PF16568
C6_S1
2 -
(0)
?
- / - / -
0
96
RBMX_HUMAN
14
100%
0.20
PF00076
C2_S1
1 -
(0)
?
- / - / -
0
97
UBQL4_HUMAN
16
100%
0.09
PF00240
C2_S1
1 -
(0)
?
- / - / -
0
98
PDC10_HUMAN
11
100%
0.53
PF08913
C1_S1
1 -
(0)
?
- / - / -
0
99
HNRH1_HUMAN
21
100%
0.19
PF08080
C1_S1
1 -
(0)
1
- / - / -
0
100
F120A_HUMAN
19
21%
0.10
PF00752
C4_S1
3 -
(0)
?
- / - / -
0
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