@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_1144: (2015-12-21 )
MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDQKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDTSLSDKKN
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.---.----......20........-30........40------..-.-....-------..-50----.........60..--.--..--...70........80.-..-..-...90........100.......110-------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLE
D
Y
A
I
S
L
E
EV---N----FN
D
F
I
V
V
D
V
R
EL
D
E
Y
E
-
E
LHLPN
A
T
L
I
S-------VN-
D
-
Q
E
K
L
-------
A
D
-
F
-----
L
S
QHKD
Q
K
V
L
L
H
C--R--AG--
R
R
A
L
D
A
A
K
S
M
H
E
LGYT-
P
Y
-
Y
L-EGNVY
D
F
EKY
G
F
R
M
V
YDDTSLSDKKN-------------------------------------------
49
Fugue
98.00
98%
-140
- C2 -
2K0Z
-
?
A:
[1-110]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
E
D
Y
A
I
S
L
E
E
V
---
N
----
F
N
D
F
I
V
V
D
V
R
E
L
D
E
Y
E
-
E
L
H
L
P
N
A
T
L
I
S
-------
V
N
-
D
-
Q
E
K
L
-------
A
D
-
F
-----
L
S
Q
H
K
D
K
K
V
L
L
H
C
--
R
--
A
G
--
R
R
A
L
D
A
A
K
S
M
H
E
L
G
Y
T
-
P
Y
-
Y
L
-
E
G
N
V
Y
D
F
E
K
Y
G
F
R
M
V
Y
D
D
T
C
--
D
K
K
N
-------------------------------------------
1
PsiBlast_PDB
97.52
96%
-140
- C2 -
2K0Z
-
?
A:
[1-110]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
E
D
Y
A
I
S
L
E
E
V
---
N
----
F
N
D
F
I
V
V
D
V
R
E
L
D
E
Y
E
-
E
L
H
L
P
N
A
T
L
I
S
-------
V
N
-
D
-
Q
E
K
L
-------
A
D
-
F
-----
L
S
Q
H
K
D
K
K
V
L
L
H
C
--
R
--
A
G
--
R
R
A
L
D
A
A
K
S
M
H
E
L
G
Y
T
-
P
Y
-
Y
L
-
E
G
N
V
Y
D
F
E
K
Y
G
F
R
M
V
Y
D
D
T
--
C
D
K
K
N
-------------------------------------------
26
HHSearch
87.32
90%
-120
- C2 -
2K0Z
-
?
A:
[1-106]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
E
D
Y
A
I
S
L
E
E
V
---
N
----
F
N
D
F
I
V
V
D
V
R
E
L
D
E
Y
E
-
E
L
H
L
P
N
A
T
L
I
S
-------
V
N
D
Q
-
E
K
L
A
-------
D
F
-
L
------
S
Q
H
K
D
K
K
V
L
L
H
C
--
R
--
A
G
--
R
R
A
L
D
A
A
K
S
M
H
E
L
G
Y
T
-
P
Y
-
Y
L
-
E
G
N
V
Y
D
F
E
K
Y
G
F
R
M
V
Y
D
D
T
C
D
K
K
N
---------------------------------------------
37
HHSearch
64.16
27%
-96
- C2 -
3TP9
-
?
A:
[373-473]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
N
V
S
P
D
E
V
R
G
A
L
A
---
Q
Q
G
L
W
L
L
D
V
R
N
V
D
E
W
A
-
G
G
H
L
P
Q
A
H
H
I
P
-------
L
S
K
L
-
A
A
H
I
-------
H
D
-
V
--------
P
R
D
G
S
V
C
V
Y
C
--
R
--
T
G
--
G
R
S
A
I
A
A
S
L
L
R
A
H
G
V
G
D
V
R
-
N
M
-
V
G
G
Y
E
A
W
R
G
K
G
F
P
V
E
A
-----------------------------------------------------
6
PsiBlast_PDB
63.79
29%
-103
- C2 -
3NHV
1
?
A:
[20-113]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
D
L
S
I
D
I
K
K
----
G
----
Y
E
G
I
I
V
V
D
V
R
D
A
E
A
Y
K
-
E
C
H
I
P
T
A
I
S
I
P
-------
G
N
-
K
I
N
E
D
T
-------
T
K
-
R
-----
L
S
--
K
E
K
V
I
I
T
Y
C
--
W
GP
A
C
--
N
G
A
T
K
A
A
A
K
F
A
Q
L
G
F
R
-
V
K
-
E
L
-
I
G
G
I
E
Y
W
R
K
E
N
G
E
V
E
G
T
L
G
A
K
A
D
L
F
W
-------------------------------------------
31
HHSearch
63.14
25%
-122
- C2 -
3GK5
-
?
A:
[101-199]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
R
S
I
N
A
A
D
L
Y
E
-
N
----
I
K
A
Y
T
V
L
D
V
R
E
P
F
E
L
I
-
F
G
S
I
A
N
S
I
N
I
P
-------
I
S
E
L
-
R
E
K
W
-------
K
I
-
L
--------
E
R
D
K
K
Y
A
V
I
C
--
A
--
H
G
--
N
R
S
A
A
A
V
E
F
L
S
Q
L
G
L
N
-
I
V
-
D
V
-
E
G
G
I
Q
S
W
I
E
E
G
Y
P
V
V
L
-----------------------------------------------------
2
PsiBlast_PDB
62.99
29%
-101
- C2 -
3O3W
-
?
A:
[35-128]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
D
L
S
I
D
I
K
K
----
G
----
Y
E
G
I
I
V
V
D
V
R
D
A
E
A
Y
K
-
E
C
H
I
P
T
A
I
S
I
P
-------
G
N
-
K
I
N
E
D
T
-------
T
K
-
R
-----
L
S
--
K
E
K
V
I
I
T
Y
C
WG
P
--
A
C
--
N
G
A
T
K
A
A
A
K
F
A
Q
L
G
F
R
-
V
K
-
E
L
-
I
G
G
I
E
Y
W
R
K
E
N
G
---------------------------------------------------------
30
HHSearch
59.73
25%
-94
- C2 -
3FOJ
1
?
A:
[2-99]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
I
T
V
T
E
L
K
E
-
K
I
L
D-
A
N
P
V
N
I
V
D
V
R
T
D
Q
E
T
A
-
M
G
I
I
P
G
A
E
T
I
P
-------
M
N
S
I
-
P
D
N
L
-------
N
Y
-
F
--------
N
D
N
E
T
Y
Y
I
I
C
--
K
--
A
G
--
G
R
S
A
Q
V
V
Q
Y
L
E
Q
N
G
V
N
-
A
V
-
N
V
-
E
G
G
M
D
E
F
G
D
E
G
L
E
H
-------------------------------------------------------
36
HHSearch
59.32
25%
-86
- C2 -
3NHV
1
?
A:
[16-124]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
T
D
I
A
D
L
S
I
D
I
K
K
G-
Y
E
G
I
I
V
V
D
V
R
D
A
E
A
Y
K
-
E
C
H
I
P
T
A
I
S
I
P
-------
G
N
K
I
-
N
E
D
T
-------
T
K
-
R
-------
L
S
K
E
K
V
I
I
T
Y
C
--
W
--
G
P
AC
N
G
A
T
K
A
A
A
K
F
A
Q
L
G
F
R
-
V
K
-
E
L
-
I
G
G
I
E
Y
W
R
K
E
N
G
E
V
E
G
T
L
G
A
K
A
D
L
F
W
-------------------------------------------
11
PsiBlast_PDB
58.01
24%
-116
- C2 -
3GK5
-
?
A:
[112-198]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
----
I
K
A
Y
T
V
L
D
V
R
E
P
F
E
L
I
-
F
G
S
I
A
N
S
I
N
I
P
-------
I
S
-
E
-
L
R
E
K
-------
W
K
-
I
-----
L
--
E
R
D
K
K
Y
A
V
I
C
--
A
--
H
G
--
N
R
S
A
A
A
V
E
F
L
S
Q
L
G
L
N
-
I
V
-
D
V
-
E
G
G
I
Q
S
W
I
E
E
G
Y
P
V
V
------------------------------------------------------
28
HHSearch
57.74
23%
-97
- C2 -
3IWH
1
?
A:
[2-102]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
I
T
T
D
E
L
K
N
-
K
L
LE-
S
K
P
V
Q
I
V
D
V
R
T
D
E
E
T
A
-
M
G
Y
I
P
N
A
K
L
I
P
-------
M
D
T
I
-
P
D
N
L
-------
N
S
-
F
--------
N
K
N
E
I
Y
Y
I
V
C
--
A
--
G
G
--
V
R
S
A
K
V
V
E
Y
L
E
A
N
G
I
D
-
A
V
-
N
V
-
E
G
G
M
H
A
W
G
D
E
G
L
E
I
K
S
-----------------------------------------------------
7
PsiBlast_PDB
56.97
25%
-104
- C2 -
2HHG
1
?
A:
[29-128]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
A
L
H
K
S
---
G
----
A
S
D
V
V
I
V
D
I
R
D
P
R
E
I
E
R
D
G
K
I
P
G
S
F
S
C
T
RGM
L
E
F
W
I
D
-
P
-
Q
S
P
Y
-------
A
K
-
P
-----
I
F
Q
E
-
D
K
K
F
V
F
Y
C
--
A
--
G
G
--
L
R
S
A
L
A
A
K
T
A
Q
D
M
G
L
K
-
P
V
A
H
I
-
E
G
G
F
G
A
W
R
D
A
G
G
P
I
E
------------------------------------------------------
47
HHSearch
56.94
16%
-90
- C2 -
1YT8
-
?
A:
[376-481]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
T
I
D
P
T
T
L
A
D
W
L
G---
E
P
G
T
R
V
L
D
F
T
A
S
A
N
Y
A
-
K
R
H
I
P
G
A
A
W
V
L
-------
R
S
Q
L
-
K
Q
A
L
-------
E
R
-
L
--------
G
T
A
E
R
Y
V
L
T
C
--
G
--
S
S
--
L
L
A
R
F
A
V
A
E
V
Q
A
L
S
G
K
P
V
F
-
L
L
-
D
G
G
T
S
A
W
V
A
A
G
L
P
T
E
D
G
E
S
L
L
A
S
P
R
I
-------------------------------------------
48
HHSearch
56.67
28%
-72
- C2 -
2JTQ
-
PSPE_ECOLI
A:
[2-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
H
W
I
D
V
R
V
P
E
Q
Y
Q
-
Q
E
H
V
Q
G
A
I
N
I
P
-------
L
K
E
V
-
K
E
R
I
-------
A
T
-
A
------
V
P
D
K
N
D
T
V
K
V
Y
C
--
N
--
A
G
--
R
Q
S
G
Q
A
K
E
I
L
S
E
M
G
Y
T
H
V
E
-
N
A
--
G
G
L
K
D
I
A
M
P
K
V
K
G
-------------------------------------------------------
53
Fugue
56.06
16%
-73
- C2 -
1YT8
2
?
A:
[6-530]
I
A
V
R
T
F
H
D
I
R
A
A
L
L
A
R
R
E
L
A
L
L
DVRE
E
D
P
F
A
Q
AHPLF
A
A
N
L
P
LSRLELEIHARVPRRDTP
I
T
V
Y
D
DGEG
L
A
P
V
A
A
Q
R
L
H
D
L
GYS
D
V
A
L
LDGG
L
S
G
W
R
N
A
G
G
E
L
F
R
D
VN
V
P
S
K
A
F
G
E
L
V
E
A
E
RHT
P
S
L
A
A
E
E
V
Q
A
L
L
D
A
RAE
A
V
I
L
D
ARR
F
D
E
Y
Q
T
MSIPG
G
I
S
V
P
GAELVLRVAELAPDPR
T
R
V
I
V
N
C
AGR
T
R
S
I
I
G
T
Q
S
L
L
N
A
GIPNP
V
A
A
LRNG
T
I
G
W
T
L
A
G
Q
Q
L
E
H
G
Q
T
R
R
F
G
AIS
Q
D
T
R
K
A
A
A
Q
R
A
R
A
V
A
D
R
A
G
V
E
R
L
D
L
A
G
L
A
Q
W
Q
D
EHD
R
T
T
Y
L
L
D
VRT
P
E
E
Y
E
A
GHLPG
S
R
S
T
P
G
G
Q
L
V
Q
ETDHVASVRG
A
R
L
V
L
V
D
DDGV
R
A
N
M
S
A
S
W
L
A
Q
M
GWQ
V
A
V
L
D
GLSEADFSERGAWSAPLPR
Q
P
R
A
D
T
I
D
P
T
T
L
A
D
W
L
---
G
----
E
P
G
T
R
V
L
D
F
T
A
S
A
N
Y
A
-
K
R
H
I
P
G
A
A
W
V
L
-------
R
S
-
Q
-
L
K
Q
A
-------
L
E
-
R
-----
L
G
--
T
A
E
R
Y
V
L
T
C
--
G
--
S
S
--
L
L
A
R
F
A
V
A
E
V
Q
A
L
S
G
K
-
P
V
-
F
L
L
D
G
G
T
S
A
W
V
A
A
G
L
P
T
E
D
G
E
S
L
L
A
S
P
R
I
DRYRRPYEGTDNP
R
E
A
M
Q
G
Y
L
D
W
E
F
G
L
V
E
Q
L
G
R
D
GTHG
F
F
V
I
E
43
HHSearch
56.01
18%
-85
- C2 -
1YT8
1
?
A:
[6-115]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
V
R
T
F
H
D
I
R
A
A
L
L
A
--
R
R
E
L
A
L
L
D
V
R
E
E
D
P
F
A
-
Q
A
H
P
L
F
A
A
N
L
P
-------
L
S
R
L
-
E
L
E
I
-------
H
A
-
R
-----
V
-
P
R
R
D
T
P
I
T
V
Y
D
--
D
--
G
E
--
G
L
A
P
V
A
A
Q
R
L
H
D
L
G
Y
S
D
V
A
-
L
L
-
D
G
G
L
S
G
W
R
N
A
G
G
E
L
F
R
D
V
N
V
P
S
K
A
F
G
-------------------------------------------
38
HHSearch
55.15
21%
-86
- C2 -
3D1P
2
RDL1_YEAST
A:
[21-137]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
Q
S
Y
S
F
E
D
M
K
R
-
I
V
G
K
H
D
P
N
V
V
L
V
D
V
R
E
P
S
E
Y
S
-
I
V
H
I
P
A
S
I
N
V
P
-------
Y
R
S
H
-
P
D
A
F
ALD
P
L
E
F
E
K
Q
I
GI---
P
K
P
D
S
A
K
E
L
I
F
Y
C
--
A
--
S
G
--
K
R
G
G
E
A
Q
K
V
A
S
S
H
G
Y
S
N
T
S
-
L
Y
-
P
G
S
M
N
D
W
V
S
H
G
G
D
K
L
D
L
----------------------------------------------------
34
HHSearch
54.54
19%
-86
- C2 -
2HHG
2
?
A:
[21-132]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
T
L
T
T
A
D
A
I
A
L
H
K
S
G-
A
S
D
V
V
I
V
D
I
R
D
P
R
E
I
E
R
D
G
K
I
P
G
S
F
S
C
T
-------
R
G
M
L
-
E
F
W
I
-------
D
P
-
Q
SPYAK
P
I
F
Q
E
D
K
K
F
V
F
Y
C
--
A
--
G
G
--
L
R
S
A
L
A
A
K
T
A
Q
D
M
G
L
K
P
V
A
-
H
I
-
E
G
G
F
G
A
W
R
D
A
G
G
P
I
E
------------------------------------------------------
5
PsiBlast_PDB
54.04
29%
-74
- C2 -
2JTS
-
PSPE_ECOLI
A:
[5-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
V
R
V
P
E
Q
Y
Q
-
Q
E
H
V
Q
G
A
I
N
I
P
-------
L
K
-
E
V
K
E
R
I
-------
A
T
-
A
-----
V
P
D
-
K
N
D
T
V
K
V
Y
C
--
N
--
A
G
--
R
Q
S
G
Q
A
K
E
I
L
S
E
M
G
Y
T
-
H
V
-
E
N
-
A
G
G
L
K
D
I
A
M
P
K
V
K
G
-------------------------------------------------------
4
PsiBlast_PDB
53.55
29%
-86
- C2 -
2JTR
-
PSPE_ECOLI
A:
[5-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
V
R
V
P
E
Q
Y
Q
-
Q
E
H
V
Q
G
A
I
N
I
P
-------
L
K
-
E
V
K
E
R
I
-------
A
T
-
A
-----
V
P
D
-
K
N
D
T
V
K
V
Y
C
--
N
--
A
G
--
R
Q
S
G
Q
A
K
E
I
L
S
E
M
G
Y
T
-
H
V
-
E
N
-
A
G
G
L
K
D
I
A
M
P
K
V
K
G
-------------------------------------------------------