@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu00630: (2016-06-02 )
MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.....--.---.-.30.......-.40.........50........60..-.-.-.-.---..70........80...--------------.-----------------....90........100.......110.......120......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSIEVGSKL
Q
G
K
I
T
G
I
TNF
G
A
F
V
ELP--G---G-ST
G
L
V
H
I
S
E
V
-
A
D
-
N
Y
V
K
D
I
N
D
HLKVG
D
Q
V
E
V
K
V
I
N
V-E-K-D-
G
---
K
I
G
L
S
I
KKAKDRPQARP--------------R-----------------NDFR
P
K
E
S
F
E
Q
K
M
N
K
F
L
KD
S
E
D
R
L
S
S
L
K
RNTESKRGGRGARRG
51
Fugue
91.23
38%
-114
- C1 -
2OCE
-
?
A:
[2-730]
D
S
I
N
T
R
I
A
E
E
L
S
A
LPSGRVQ
P
Q
Q
V
A
A
A
V
A
L
L
D
E
GST
V
P
F
I
A
R
YRKEVTGSLD
D
T
Q
L
R
M
L
E
E
R
L
R
Y
L
R
E
L
E
E
R
R
G
A
I
L
A
S
I
E
E
Q
GKLT
P
E
L
A
R
D
I
K
L
ADT
K
T
R
L
E
D
L
Y
LPYKQKRRT
K
G
Q
I
A
L
E
A
GL
G
A
L
A
D
A
L
F
D
D
PTLV
P
E
S
E
A
A
R
F
VDAEKGFAD
V
K
A
V
L
E
G
A
K
Y
I
L
M
E
R
F
A
E
D
A
T
L
L
D
K
L
R
V
F
M
K
N
E
A
T
L
T
A
R
V
V
PGKEQEGAKFSDYF
E
H
D
E
P
LKSAP
S
H
R
A
L
A
I
F
R
G
R
N
E
GV
L
S
A
S
L
K
V
GEEAP
G
T
L
H
P
C
E
V
M
I
A
E
R
F
GLSNQGRAA
D
K
W
L
A
E
V
V
R
W
T
W
K
V
K
L
Y
T
H
L
E
T
D
L
F
G
E
L
R
D
G
A
E
D
E
A
I
S
V
F
A
R
N
L
H
D
L
L
L
AAPAGP
R
A
T
L
G
L
DPGLRT
G
V
K
V
A
V
V
D
ATGKLL
D
T
A
T
V
Y
PHAPKNQ
W
D
Q
T
L
A
V
L
A
A
L
C
A
K
H
QVE
L
I
A
I
G
NGTA
S
R
E
T
D
K
L
A
G
E
L
I
K
K
Y
PGMK
L
T
K
I
M
V
S
EAG
A
S
V
Y
S
A
S
E
L
A
A
K
E
F
PELD
V
S
L
R
G
A
V
S
I
A
R
R
L
Q
D
P
L
A
E
L
V
K
I
EPKSIGVGQYQHDVS
Q
L
K
L
A
R
S
L
D
A
V
V
E
D
C
V
N
A
V
GVDVNTAS
A
A
L
L
A
R
ISGLNST
L
A
Q
N
I
V
A
H
R
D
A
NGAFRTRDELKKVSRLG
E
K
T
F
E
Q
AAGF
L
R
V
M
NGDNPLDASAVHPET
Y
P
L
V
Q
R
IAADTERDIRSLIGDSAFLKRLDPKKFTDETFGLP
T
V
T
D
I
L
K
E
L
DKPGRDPRPEFKTAEFQEGVESL
K
D
L
K
P
G
M
V
L
E
G
V
V
T
N
V
T
N
F
G
A
F
V
D
I
G
--
V
---
H
-
Q
D
G
L
V
H
I
S
A
L
-
S
E
-
K
F
V
K
D
P
Y
E
V
V
K
A
G
D
I
V
K
V
K
V
M
E
V
-
D
I
P
-
R
-
N
---
R
V
G
L
S
M
R
M
S
D
T
P
G
-------------------------------------------------------------------------------
1
PsiBlast_PDB
84.26
51%
-117
- C1 -
2K4K
-
GS13_BACSU
A:
[5-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
V
G
S
V
Y
T
G
K
V
T
G
L
Q
A
Y
G
A
F
V
A
L
D
--
E
---
E
-
T
Q
G
L
V
H
I
S
E
V
-
T
H
-
G
F
V
K
D
I
N
E
H
L
S
V
G
D
E
V
Q
V
K
V
L
A
V
D
E
-
E
-
K
-
G
---
K
I
S
L
S
I
R
A
T
Q
A
A
P
E
K
K
E
--------------
S
-----------------
K
P
R
K
P
K
-------------------------------------
24
HHSearch
80.54
43%
-92
- C1 -
2K4K
-
GS13_BACSU
A:
[5-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
V
G
S
V
Y
T
G
K
V
T
G
L
Q
A
Y
G
A
F
V
A
L
D
--
E
---
E
-
T
Q
G
L
V
H
I
S
E
V
-
T
H
-
G
F
V
K
D
I
N
E
H
L
S
V
G
D
E
V
Q
V
K
V
L
A
V
-
D
-
E
E
K
-
G
---
K
I
S
L
S
I
R
A
T
Q
A
A
P
E
K
K
E
SKPRKPKAAQVSEE
A
-----------------
S
T
P
Q
G
F
N
T
L
K
D
K
L
E
E
W
I
E
M
S
N
R
---------------------
2
PsiBlast_PDB
77.21
52%
-115
- C1 -
1SRO
-
A:
[3-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
V
G
R
V
Y
T
G
K
V
T
R
I
V
D
F
G
A
F
V
A
I
G
--
G
---
G
-
K
E
G
L
V
H
I
S
Q
I
-
A
D
-
K
R
V
E
K
V
T
D
Y
L
Q
M
G
Q
E
V
P
V
K
V
L
E
V
-
D
-
R
-
Q
-
G
---
R
I
R
L
S
I
K
E
A
-----------------------------------------------------------------------------------
12
PsiBlast_PDB
76.73
41%
-116
- C1 -
3AEV
-
IF2A_PYRHO
A:
[10-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
G
E
F
V
V
A
T
V
K
R
I
H
N
Y
G
A
F
L
E
L
D
EY
P
---
G
-
K
E
A
F
M
H
I
S
E
V
-
A
S
-
T
W
V
R
N
I
R
D
Y
L
K
E
G
Q
K
V
V
A
K
V
I
R
V
-
D
P
R
-
K
-
G
---
H
I
D
L
S
L
R
R
------------------------------------------------------------------------------------
6
PsiBlast_PDB
76.67
41%
-108
- C1 -
4NNG
-
RS1_MYCTU
A:
[293-367]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
Q
I
V
A
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
--
E
---
G
-
I
E
G
L
V
H
I
S
E
L
-
A
E
-
R
H
V
E
V
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
-
D
-
L
-
E
R
R
---
R
I
S
L
S
L
K
Q
A
N
E
---------------------------------------------------------------------------------
4
PsiBlast_PDB
76.46
43%
-105
- C1 -
3BZK
-
?
A:
[655-729]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
V
L
E
G
V
V
T
N
V
T
N
F
G
A
F
V
D
I
G
--
V
---
H
-
Q
D
G
L
V
H
I
S
A
L
-
S
E
-
K
F
V
K
D
P
Y
E
V
V
K
A
G
D
I
V
K
V
K
V
M
E
V
-
D
I
P
-
R
-
N
---
R
V
G
L
S
M
R
M
S
-
D
T
P
-------------------------------------------------------------------------------
3
PsiBlast_PDB
76.43
43%
-116
- C1 -
3BZC
-
?
A:
[655-729]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
V
L
E
G
V
V
T
N
V
T
N
F
G
A
F
V
D
I
G
--
V
---
H
-
Q
D
G
L
V
H
I
S
A
L
-
S
E
-
K
F
V
K
D
P
Y
E
V
V
K
A
G
D
I
V
K
V
K
V
M
E
V
-
D
I
P
-
R
-
N
---
R
V
G
L
S
M
R
M
S
-
D
T
P
-------------------------------------------------------------------------------
25
HHSearch
76.35
32%
-81
- C1 -
4NNG
-
RS1_MYCTU
A:
[291-411]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
I
G
Q
I
V
A
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
--
E
---
G
-
I
E
G
L
V
H
I
S
E
L
-
A
E
-
R
H
V
E
V
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
-
D
-
L
E
R
-
R
---
R
I
S
L
S
L
K
Q
A
N
E
D
Y
T
E
E
F
--------------
D
PAKYGMADSYDEQGNYI
F
P
E
G
F
D
A
E
T
N
E
W
L
E
G
F
E
K
Q
R
-----------------------
5
PsiBlast_PDB
75.34
43%
-114
- C1 -
2OCE
-
?
A:
[655-729]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
V
L
E
G
V
V
T
N
V
T
N
F
G
A
F
V
D
I
G
--
V
---
H
-
Q
D
G
L
V
H
I
S
A
L
-
S
E
-
K
F
V
K
D
P
Y
E
V
V
K
A
G
D
I
V
K
V
K
V
M
E
V
-
D
I
P
-
R
-
N
---
R
V
G
L
S
M
R
M
S
-
D
T
P
-------------------------------------------------------------------------------
16
PsiBlast_PDB
74.75
35%
-114
- C1 -
2CQO
-
NO40_HUMAN
A:
[19-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Q
G
E
V
A
M
V
T
D
Y
G
A
F
I
K
I
P
--
G
---
C
R
K
Q
G
L
V
H
R
T
H
M
-
S
S
-
C
R
V
D
K
P
S
E
I
V
D
V
G
D
K
V
W
V
K
L
I
G
R
-
E
-
M
-
K
-
N
D
R
I
K
V
S
L
S
M
K
-------------------------------------------------------------------------------------
29
HHSearch
74.66
38%
-102
- C1 -
3AEV
-
IF2A_PYRHO
A:
[9-92]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
E
G
E
F
V
V
A
T
V
K
R
I
H
N
Y
G
A
F
L
E
L
D
EY
P
---
G
-
K
E
A
F
M
H
I
S
E
V
-
A
S
-
T
W
V
R
N
I
R
D
Y
L
K
E
G
Q
K
V
V
A
K
V
I
R
V
-
D
-
P
R
K
-
G
---
H
I
D
L
S
L
R
R
V
T
Q
Q
Q
R
K
A
----------------------------------------------------------------------------
48
HHSearch
74.41
41%
-120
- C1 -
3BZC
-
?
A:
[652-728]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
P
G
M
V
L
E
G
V
V
T
N
V
T
N
F
G
A
F
V
D
I
G
--
V
---
H
-
Q
D
G
L
V
H
I
S
A
L
-
S
E
-
K
F
V
K
D
P
Y
E
V
V
K
A
G
D
I
V
K
V
K
V
M
E
V
-
D
-
I
P
R
-
N
---
R
V
G
L
S
M
R
M
S
D
T
---------------------------------------------------------------------------------
8
PsiBlast_PDB
74.24
41%
-110
- C1 -
4NNK
-
RS1_MYCTU
A:
[293-367]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
Q
I
V
P
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
--
E
---
G
-
I
E
G
L
V
H
I
S
E
L
-
A
E
-
R
H
V
E
V
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
-
D
-
L
-
E
R
R
---
R
I
S
L
S
L
K
Q
A
N
E
---------------------------------------------------------------------------------
17
PsiBlast_PDB
73.24
39%
-119
- C1 -
2EQS
-
DHX8_HUMAN
A:
[264-336]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
D
I
Y
N
G
K
V
T
S
I
M
Q
F
G
C
F
V
Q
L
E
--
G
LRK
R
-
W
E
G
L
V
H
I
S
E
L
R
R
E
-
G
R
V
A
N
V
A
D
V
V
S
K
G
Q
R
V
K
V
K
V
L
S
F
-
T
-
G
-
T
-----
K
T
S
L
S
M
K
-------------------------------------------------------------------------------------
11
PsiBlast_PDB
72.11
33%
-71
- C1 -
1YZ6
-
IF2A_PYRAB
A:
[10-114]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
G
E
F
V
V
A
T
V
K
R
I
H
N
Y
G
A
F
L
E
L
D
EY
P
---
G
-
K
E
A
F
M
H
I
S
E
V
-
A
S
-
T
W
V
R
N
I
R
D
Y
L
K
E
G
Q
K
V
V
A
K
V
I
R
V
-
D
P
R
-
K
-
G
---
H
I
D
L
S
L
R
R
V
T
Q
Q
Q
R
K
A
K
--------------
L
-----------------
Q
E
F
K
R
A
----
Q
K
A
E
N
L
L
K
L
A
A
E
K
L
-------------------
41
HHSearch
71.98
31%
-82
- C1 -
2CQO
-
NO40_HUMAN
A:
[13-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
L
Y
T
I
F
Q
G
E
V
A
M
V
T
D
Y
G
A
F
I
K
I
P
--
G
C--
R
-
K
Q
G
L
V
H
R
T
H
M
-
S
S
-
C
R
V
D
K
P
S
E
I
V
D
V
G
D
K
V
W
V
K
L
I
G
R
-
E
-
M
-
K
N
D
R
I
-
K
V
S
L
S
M
K
V
V
N
Q
G
T
G
K
D
----------------------------------------------------------------------------
40
HHSearch
71.20
36%
-92
- C1 -
2EQS
-
DHX8_HUMAN
A:
[262-345]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
I
G
D
I
Y
N
G
K
V
T
S
I
M
Q
F
G
C
F
V
Q
L
E
--
G
LRK
R
-
W
E
G
L
V
H
I
S
E
L
-
R
R
E
G
R
V
A
N
V
A
D
V
V
S
K
G
Q
R
V
K
V
K
V
L
S
F
-
T
-
G
---
T
---
K
T
S
L
S
M
K
D
V
D
Q
E
T
G
E
D
----------------------------------------------------------------------------
9
PsiBlast_PDB
70.04
40%
-107
- C1 -
4NNH
-
RS1_MYCS2
A:
[293-367]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
Q
I
V
P
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
--
E
---
G
-
I
E
G
L
V
H
I
S
E
L
-
S
E
-
R
---
V
P
D
Q
V
V
Q
V
G
D
D
A
M
V
K
V
I
D
I
-
D
-
L
-
E
R
R
---
R
I
S
L
S
L
K
Q
A
N
E
---------------------------------------------------------------------------------
7
PsiBlast_PDB
69.58
41%
-94
- C1 -
4NNI
2
RS1_MYCTU
A:
[16-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
Q
I
V
P
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
--
E
---
G
-
I
E
G
L
V
H
I
S
E
L
-
A
E
-
R
H
V
E
V
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
-
D
-
L
-
E
R
R
---
R
I
S
L
S
L
K
Q
A
N
E
---------------------------------------------------------------------------------