@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2127: (2016-04-01 )
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DER_C_19(1LK7)
RPIA_PYRHO
[Raw transfer]




DER_A_17(1LK7)
RPIA_PYRHO
[Raw transfer]




5RP_A_5(4M8L)
RPIA_FRATW
[Raw transfer]




DER_B_18(1LK7)
RPIA_PYRHO
[Raw transfer]




5RP_B_22(4M8L)
RPIA_FRATW
[Raw transfer]




5RP_A_3(3HHE)
RPIA_BARHE
[Raw transfer]




CIT_C_3(1M0S)
RPIA_HAEIN
[Raw transfer]




CIT_C_3(1M0S)
RPIA_HAEIN
[Raw transfer]




CIT_D_4(1M0S)
RPIA_HAEIN
[Raw transfer]




5RP_A_3(3HHE)
RPIA_BARHE
[Raw transfer]




A5P_A_4(1UJ6)
RPIA_THET2
[Raw transfer]




A5P_A_4(1UJ6)
RPIA_THET2
[Raw transfer]




5RP_B_4(3ENW)
RPIA_VIBVY
[Raw transfer]




DER_D_20(1LK7)
RPIA_PYRHO
[Raw transfer]




5RP_A_2(1UJ5)
RPIA_THET2
[Raw transfer]




FLC_B_6(4X84)
RPIA_PSEAE
[Raw transfer]




5RP_B_6(3HHE)
RPIA_BARHE
[Raw transfer]




FLC_A_5(4X84)
RPIA_PSEAE
[Raw transfer]




FLC_C_7(4X84)
RPIA_PSEAE
[Raw transfer]




FLC_D_8(4X84)
RPIA_PSEAE
[Raw transfer]




5RP_A_3(3ENW)
RPIA_VIBVY
[Raw transfer]




ABF_A_3(1O8B)
RPIA_ECOLI
[Raw transfer]




3GR_D_13(3KWM)
RPIA_FRATT
[Raw transfer]




EDO_A_3(3U7J)
?
[Raw transfer]




PGO_D_19(3IXQ)
RPIA_METJA
[Raw transfer]




MLT_A_4(4NML)
?
[Raw transfer]




PGO_B_10(3IXQ)
RPIA_METJA
[Raw transfer]




ABF_A_3(3ENV)
RPIA_VIBVY
[Raw transfer]




PGO_A_8(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_A_8(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_C_15(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_B_12(3IXQ)
RPIA_METJA
[Raw transfer]




ABF_B_4(3ENV)
RPIA_VIBVY
[Raw transfer]




PEG_C_9(3KWM)
RPIA_FRATT
[Raw transfer]




PEG_C_12(3KWM)
RPIA_FRATT
[Raw transfer]




27 PsiBlast_CBE 96.3241%-120 - C6 -4GMK - ? -
1 PsiBlast_PDB 94.8444%-104 - C6 -1LK5 - RPIA_PYRHO -
3 PsiBlast_PDB 94.7541%-114 - C6 -4GMK - ? -
2 PsiBlast_PDB 94.3744%-102 - C6 -1LK7 4.1 RPIA_PYRHO
22 PsiBlast_CBE 93.8544%-100 - C6 -1LK7 4.0 RPIA_PYRHO
24 PsiBlast_CBE 93.6844%-104 - C6 -1LK5 - RPIA_PYRHO -
21 PsiBlast_CBE 93.5844%-103 - C6 -1LK7 4.1 RPIA_PYRHO
26 PsiBlast_CBE 93.5444% -99 - C6 -1LK5 - RPIA_PYRHO -
25 PsiBlast_CBE 93.3244%-102 - C6 -1LK5 - RPIA_PYRHO -
23 PsiBlast_CBE 93.2244% -98 - C6 -1LK7 4.1 RPIA_PYRHO
47 HHSearch 92.1143%-102 * C6 *1LK5 - RPIA_PYRHO -
28 PsiBlast_CBE 91.5936%-115 - C6 -3HHE 3.7 RPIA_BARHE
5 PsiBlast_PDB 90.9536%-111 - C6 -3HHE 2.9 RPIA_BARHE
53 HHSearch 90.0136%-104 - C6 -3HHE 2.9 RPIA_BARHE
50 HHSearch 89.7239%-105 - C6 -3L7O - RPIA_STRMU -
48 HHSearch 88.9636%-102 - C6 -1UJ6 4.0 RPIA_THET2
8 PsiBlast_PDB 88.7234%-101 - C6 -1UJ6 4.0 RPIA_THET2
4 PsiBlast_PDB 88.1041%-111 - C6 -3L7O - RPIA_STRMU -
30 PsiBlast_CBE 87.8737%-106 - C6 -3IXQ 3.1 RPIA_METJA
7 PsiBlast_PDB 87.6034% -99 - C6 -1UJ4 - RPIA_THET2 -
10 PsiBlast_PDB 87.3037%-105 - C6 -3IXQ 2.0 RPIA_METJA
32 PsiBlast_CBE 86.9637%-106 - C6 -3IXQ 3.5 RPIA_METJA
31 PsiBlast_CBE 86.7237%-104 - C6 -3IXQ 2.6 RPIA_METJA
6 PsiBlast_PDB 86.6135% -98 - C6 -1UJ5 4.0 RPIA_THET2
56 HHSearch 86.2436%-102 - C6 -3IXQ 2.0 RPIA_METJA
12 PsiBlast_PDB 84.6435%-111 - C6 -4NML 3.5 ?
29 PsiBlast_CBE 84.0835% -96 - C6 -1M0S 3.0 RPIA_HAEIN
55 HHSearch 84.0435% -95 - C6 -1M0S 3.2 RPIA_HAEIN
9 PsiBlast_PDB 83.1935% -93 - C6 -1M0S 3.2 RPIA_HAEIN
36 PsiBlast_CBE 81.1633% -90 - C6 -4X84 3.3 RPIA_PSEAE
37 PsiBlast_CBE 81.0433% -93 - C6 -4X84 3.4 RPIA_PSEAE
35 PsiBlast_CBE 80.7233% -90 - C6 -4X84 3.4 RPIA_PSEAE
40 PsiBlast_CBE 80.3737% -91 - C6 -4M8L 4.1 RPIA_FRATW
16 PsiBlast_PDB 79.7733% -90 - C6 -4X84 3.4 RPIA_PSEAE
19 PsiBlast_PDB 79.7237% -91 - C6 -4M8L 3.6 RPIA_FRATW
43 PsiBlast_CBE 79.6937% -89 - C6 -3KWM 2.8 RPIA_FRATT
42 PsiBlast_CBE 79.3037% -88 - C6 -3KWM 2.4 RPIA_FRATT
14 PsiBlast_PDB 74.8937% -81 - C6 -3ENV 3.0 RPIA_VIBVY
33 PsiBlast_CBE 74.8237% -88 - C6 -3ENW 3.3 RPIA_VIBVY
15 PsiBlast_PDB 74.7037% -83 - C6 -3ENW 3.4 RPIA_VIBVY
34 PsiBlast_CBE 74.2337% -85 - C6 -3ENV 2.6 RPIA_VIBVY
11 PsiBlast_PDB 73.9635% -83 - C6 -3U7J 2.8 ?
54 HHSearch 67.4533% -86 - C6 -1O8B 4.4 RPIA_ECOLI