@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3383c: (2016-05-19 )
MGGVLTLDAAFLGSVPADLGKALLERARADCGPVLHRAIESMREPLATMAGYHLGWWNADRSTAAGSSGKYFRAALVYAAAAACGGDVGDATPVSAAVELVHNFTLLHDDVMDGDATRRGRPTVWSVWGVGVAILLGDALHATAVRILTGLTDECVAVRAIRRLQMSCLDLCIGQFEDCLLEGQPEVTVDDYLRMAAGKTAALTGCCCALGALVANADDATIAALERFGHELGLAFQCVDDLIGIWGDPGVTGKPVGNDLARRKATLPVVAALNSRSEAATELAALYQAPAAMTASDVERATALVKVAGGGHVAQRCADERIQAAIAALPDAVRSPDLIALSQLICRREC

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GPP_D_9(3KRP)
?
[Raw transfer]




DMA_B_12(4GP2)
?
[Raw transfer]




DMA_A_6(4GP2)
?
[Raw transfer]




IPR_A_9(1RQJ)
ISPA_ECOLI
[Raw transfer]




IPR_B_11(1RQJ)
ISPA_ECOLI
[Raw transfer]




GOL_A_5(3Q2Q)
?
[Raw transfer]




IPE_A_5(3KRC)
?
[Raw transfer]




DMA_A_3(4GP1)
?
[Raw transfer]




CIT_A_3(3PKO)
?
[Raw transfer]




RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]




RIS_B_12(1RQJ)
ISPA_ECOLI
[Raw transfer]




RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]




IPE_A_4(4LLT)
?
[Raw transfer]




IPE_B_9(4LLT)
?
[Raw transfer]




PPV_A_5(3OAB)
?
[Raw transfer]




POP_A_3(3OYR)
?
[Raw transfer]




IPE_B_7(3OYR)
?
[Raw transfer]




DST_D_11(3OAB)
?
[Raw transfer]




GST_A_4(4LLS)
?
[Raw transfer]




DST_B_9(1RQI)
ISPA_ECOLI
[Raw transfer]




IPE_A_4(4LFG)
?
[Raw transfer]




DST_A_10(1RQI)
ISPA_ECOLI
[Raw transfer]




PPV_A_5(3KRF)
?
[Raw transfer]




GST_B_9(4LLS)
?
[Raw transfer]




DST_D_6(3OAC)
?
[Raw transfer]




IPE_B_9(4LFG)
?
[Raw transfer]




DST_D_11(3KRF)
?
[Raw transfer]




IPE_B_7(4LFE)
?
[Raw transfer]




IPE_A_5(3KRO)
?
[Raw transfer]




IPE_A_3(4LFE)
?
[Raw transfer]




DST_D_11(3KRO)
?
[Raw transfer]




IPE_A_2(3Q2Q)
?
[Raw transfer]




53 HHSearch 97.6442%-115 - C1 -3NF2 - ? -
1 PsiBlast_PDB 94.3443%-113 - C1 -3NF2 - ? -
54 HHSearch 79.7131%-107 * C1 *1WY0 - ? -
2 PsiBlast_PDB 75.1233%-114 - C1 -1WY0 - ? -
58 HHSearch 72.7530%-111 - C1 -4DHD - ? -
47 HHSearch 72.7026%-103 - C1 -3AQB - HEXB_MICLU -
52 HHSearch 67.7428% -98 - C1 -3PKO - ? -
69 Fugue 67.6825% -96 - C1 -3AQB - HEXB_MICLU -
44 HHSearch 64.0925%-111 - C1 -4JXY - ? -
20 PsiBlast_PDB 63.5630%-102 - C1 -3PKO 3.2 ?
48 HHSearch 63.4328%-109 - C1 -4LOB - ? -
12 PsiBlast_PDB 62.4232% -96 - C1 -4GP1 4.6 ?
13 PsiBlast_PDB 62.1532% -92 - C1 -4GP2 3.7 ?
11 PsiBlast_PDB 61.1132% -96 - C1 -4DHD - ? -
46 HHSearch 60.1728%-114 - C1 -3OYR - ? -
55 HHSearch 60.1127% -88 - C1 -1WMW - ? -
26 PsiBlast_CBE 59.3132% -92 - C1 -4GP2 4.8 ?
75 Fugue 59.2827%-105 - C1 -3OYR - ? -
30 PsiBlast_CBE 56.8531%-105 - C1 -3Q2Q 2.3 ?
14 PsiBlast_PDB 56.1333%-121 - C1 -5E8L - GGPP1_ARATH -
6 PsiBlast_PDB 53.0132%-100 - C1 -3KRF 3.1 ?
23 PsiBlast_CBE 52.0632% -92 - C1 -3KRP 4.4 ?
22 PsiBlast_CBE 51.7632% -84 - C1 -3OAB 2.3 ?
7 PsiBlast_PDB 51.7232% -99 - C1 -3KRO 3.7 ?
5 PsiBlast_PDB 50.9132%-100 - C1 -3KRC 2.6 ?
24 PsiBlast_CBE 50.8132% -84 - C1 -3KRO 3.2 ?
29 PsiBlast_CBE 50.7832% -90 - C1 -3OYR 3.4 ?
9 PsiBlast_PDB 50.5032% -97 - C1 -3OAB 3.0 ?
21 PsiBlast_CBE 50.2832% -84 - C1 -3OAC 3.0 ?
25 PsiBlast_CBE 50.2632% -85 - C1 -3KRF 3.2 ?
65 HHSearch 46.9133% -92 - C1 -1RQJ 4.6 ISPA_ECOLI
19 PsiBlast_PDB 45.7732%-113 - C1 -3OYR 3.4 ?
27 PsiBlast_CBE 41.5536% -86 - C1 -4LLT 2.7 ?
16 PsiBlast_PDB 41.2836% -86 - C1 -4LLT 3.0 ?
28 PsiBlast_CBE 41.1436% -85 - C1 -4LLS 5.3 ?
15 PsiBlast_PDB 40.6336% -84 - C1 -4LLS 5.5 ?
36 PsiBlast_CBE 39.9533% -85 - C1 -1RQJ 4.8 ISPA_ECOLI
35 PsiBlast_CBE 39.7933% -87 - C1 -1RQJ 4.8 ISPA_ECOLI
33 PsiBlast_CBE 39.5533% -84 - C1 -1RQI 3.3 ISPA_ECOLI
34 PsiBlast_CBE 39.2933% -85 - C1 -1RQI 3.6 ISPA_ECOLI
38 PsiBlast_CBE 36.7831% -80 - C1 -4LFG 3.0 ?
39 PsiBlast_CBE 36.2231% -78 - C1 -4LFG 3.1 ?
40 PsiBlast_CBE 35.9931% -79 - C1 -4LFE 2.9 ?
41 PsiBlast_CBE 35.9731% -91 - C1 -4LFE 2.3 ?