@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3807: (2016-02-21 )
MALQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSDSEASAAREIAYFFAATEVCERIR

Atome Classification :

(64 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(1WKL)
NDK_THET8
[Raw transfer]



GTP_A_3(3Q86)
NDK_STAAC
[Raw transfer]



ADP_B_4(4HR2)
NDK_BURTA
[Raw transfer]



GTP_B_5(3Q86)
NDK_STAAC
[Raw transfer]



ADP_A_5(1WKL)
NDK_THET8
[Raw transfer]



UDP_D_13(3Q8V)
NDK_STAAC
[Raw transfer]



ADP_A_3(4HR2)
NDK_BURTA
[Raw transfer]



GDP_A_8(2DXE)
NDK_PYRHO
[Raw transfer]



ADP_R_5(1NLK)
NDK_MYXXA
[Raw transfer]



ADP_R_5(1NLK)
NDK_MYXXA
[Raw transfer]



CDP_E_12(3Q89)
NDK_STAAC
[Raw transfer]



GDP_A_8(2DXE)
NDK_PYRHO
[Raw transfer]



UDP_B_11(3Q8V)
NDK_STAAC
[Raw transfer]



ADP_G_7(1ZS6)
NDK3_HUMAN
[Raw transfer]



UDP_A_9(3Q8V)
NDK_STAAC
[Raw transfer]



ADP_A_7(3Q8U)
NDK_STAAC
[Raw transfer]



ADP_A_7(3Q8U)
NDK_STAAC
[Raw transfer]



ADP_G_7(1ZS6)
NDK3_HUMAN
[Raw transfer]



ADP_A_8(2DY9)
NDK_PYRHO
[Raw transfer]



GDP_G_7(1WKK)
NDK_THET8
[Raw transfer]



CDP_B_10(3Q89)
NDK_STAAC
[Raw transfer]



ADP_E_14(3Q8U)
NDK_STAAC
[Raw transfer]



ADP_K_11(1ZS6)
NDK3_HUMAN
[Raw transfer]



TYD_A_3(3EVO)
NDK_MIMIV
[Raw transfer]



ADP_A_9(2DYA)
NDK_PYRHO
[Raw transfer]



ADP_B_9(3Q8U)
NDK_STAAC
[Raw transfer]



ADP_H_24(3Q8Y)
NDK_STAAC
[Raw transfer]



ADP_A_3(3NGU)
?
[Raw transfer]



ADP_D_12(3Q8U)
NDK_STAAC
[Raw transfer]



ADP_B_4(3NGU)
?
[Raw transfer]



ADP_B_10(2DYA)
NDK_PYRHO
[Raw transfer]



ADP_I_9(1ZS6)
NDK3_HUMAN
[Raw transfer]



ADP_C_11(3Q8U)
NDK_STAAC
[Raw transfer]



CMP_R_3(1NHK)
NDK_MYXXA
[Raw transfer]



CMP_R_3(1NHK)
NDK_MYXXA
[Raw transfer]



ADP_D_15(3Q8Y)
NDK_STAAC
[Raw transfer]



CMP_L_4(1NHK)
NDK_MYXXA
[Raw transfer]



ADP_E_18(3Q8Y)
NDK_STAAC
[Raw transfer]



ADP_A_9(3Q8Y)
NDK_STAAC
[Raw transfer]



ADP_F_16(3Q8U)
NDK_STAAC
[Raw transfer]



GNP_A_7(2DXF)
NDK_PYRHO
[Raw transfer]



ADP_G_22(3Q8Y)
NDK_STAAC
[Raw transfer]



ANP_A_5(2DXD)
NDK_PYRHO
[Raw transfer]



ANP_B_6(2DXD)
NDK_PYRHO
[Raw transfer]



ADP_B_11(3Q8Y)
NDK_STAAC
[Raw transfer]



DTT_B_6(3NGS)
?
[Raw transfer]



EDO_B_7(4EK2)
NDK_BURTA
[Raw transfer]
1 PsiBlast_PDB 94.3679% -87 - C9 -3VGU - ? -
4 PsiBlast_PDB 94.2878% -82 - C9 -3VGT - ? -
22 PsiBlast_CBE 94.0373% -83 - C9 -4S0M - ? -
3 PsiBlast_PDB 93.5178% -76 - C9 -3VGS - ? -
5 PsiBlast_PDB 93.0073% -83 - C9 -4S0M - ? -
21 PsiBlast_CBE 92.6673% -85 - C9 -4S0M - ? -
6 PsiBlast_PDB 92.0973% -82 - C9 -4W98 - NDK_ACIBS -
7 PsiBlast_PDB 91.2674% -89 - C9 -4WBF - NDK_ACIBS -
2 PsiBlast_PDB 91.0679% -75 - C9 -3VGV - ? -
23 PsiBlast_CBE 91.0470% -76 - C9 -4HR2 6.0 NDK_BURTA
9 PsiBlast_PDB 90.9170% -77 - C9 -4EK2 - NDK_BURTA -
10 PsiBlast_PDB 90.2470% -79 - C9 -4HR2 8.0 NDK_BURTA
8 PsiBlast_PDB 90.0270% -82 - C9 -4DUT - NDK_BURTA -
24 PsiBlast_CBE 89.7570% -76 - C9 -4EK2 3.3 NDK_BURTA
28 PsiBlast_CBE 88.6468% -79 - C9 -3PJ9 - NDK_CAMJE -
26 PsiBlast_CBE 87.7368% -79 - C9 -3PJ9 - NDK_CAMJE -
27 PsiBlast_CBE 87.6968% -83 - C9 -3PJ9 - NDK_CAMJE -
33 PsiBlast_CBE 87.1861% -82 - C9 -2HUR - NDK_ECOLI -
32 PsiBlast_CBE 87.1861% -82 - C9 -2HUR - NDK_ECOLI -
13 PsiBlast_PDB 86.8662% -79 - C9 -2NCK - NDK_MYXXA -
35 PsiBlast_CBE 86.6662% -78 - C9 -1NHK 6.1 NDK_MYXXA
15 PsiBlast_PDB 86.0662% -79 - C9 -1NHK 5.9 NDK_MYXXA
115 HHSearch 85.6761% -76 - C9 -1NHK 5.9 NDK_MYXXA
101 Fugue 84.3260% -75 - C9 -1NLK 5.8 NDK_MYXXA
14 PsiBlast_PDB 83.9262% -77 - C9 -1NLK 5.8 NDK_MYXXA
36 PsiBlast_CBE 83.8053% -94 - C9 -1WKL 5.3 NDK_THET8
19 PsiBlast_PDB 83.6453% -94 - C9 -1WKL 5.8 NDK_THET8
44 PsiBlast_CBE 83.6050% -88 - C9 -2DXE 6.0 NDK_PYRHO
40 PsiBlast_CBE 83.1450% -89 - C9 -2DY9 6.2 NDK_PYRHO
65 PsiBlast_CBE 82.8844% -94 - C9 -3Q89 5.1 NDK_STAAC
18 PsiBlast_PDB 82.8053% -88 - C9 -1WKK 4.6 NDK_THET8
45 PsiBlast_CBE 82.7750% -92 - C9 -2DXD 5.1 NDK_PYRHO
48 PsiBlast_CBE 82.6744% -93 - C9 -3Q8Y 5.2 NDK_STAAC
51 PsiBlast_CBE 82.4644% -90 - C9 -3Q8Y 5.6 NDK_STAAC
129 HHSearch 82.4050% -85 - C9 -2DXE 7.3 NDK_PYRHO
46 PsiBlast_CBE 82.3950% -92 - C9 -2DXD 4.9 NDK_PYRHO
42 PsiBlast_CBE 82.2950% -91 - C9 -2DXF 3.9 NDK_PYRHO
54 PsiBlast_CBE 81.9344% -92 - C9 -3Q8Y 6.7 NDK_STAAC
38 PsiBlast_CBE 81.9050% -88 - C9 -2DYA 6.6 NDK_PYRHO
53 PsiBlast_CBE 81.7944% -91 - C9 -3Q8Y 4.6 NDK_STAAC
37 PsiBlast_CBE 81.7250% -89 - C9 -2DYA 5.6 NDK_PYRHO
47 PsiBlast_CBE 81.5144% -94 - C9 -3Q8Y 4.4 NDK_STAAC
57 PsiBlast_CBE 81.4044% -87 - C9 -3Q8V 5.4 NDK_STAAC
56 PsiBlast_CBE 81.2144% -89 - C9 -3Q8V 4.8 NDK_STAAC
60 PsiBlast_CBE 81.2044% -89 - C9 -3Q8U 6.5 NDK_STAAC
64 PsiBlast_CBE 81.1544% -94 - C9 -3Q89 4.4 NDK_STAAC
72 PsiBlast_CBE 81.0348% -83 - C9 -1ZS6 6.1 NDK3_HUMAN
55 PsiBlast_CBE 80.8044% -91 - C9 -3Q8V 5.0 NDK_STAAC
67 PsiBlast_CBE 80.7944% -87 - C9 -3Q86 6.2 NDK_STAAC
59 PsiBlast_CBE 80.6844% -89 - C9 -3Q8U 6.6 NDK_STAAC
66 PsiBlast_CBE 80.6744% -87 - C9 -3Q86 6.8 NDK_STAAC
124 HHSearch 80.6644% -86 * C9 *3Q8U 6.6 NDK_STAAC
63 PsiBlast_CBE 80.6244% -89 - C9 -3Q8U 6.6 NDK_STAAC
61 PsiBlast_CBE 80.1444% -87 - C9 -3Q8U 6.1 NDK_STAAC
62 PsiBlast_CBE 80.0144% -84 - C9 -3Q8U 6.2 NDK_STAAC
122 HHSearch 79.8848% -84 - C9 -1ZS6 6.9 NDK3_HUMAN
73 PsiBlast_CBE 79.5648% -84 - C9 -1ZS6 6.9 NDK3_HUMAN
50 PsiBlast_CBE 79.3044% -91 - C9 -3Q8Y 5.7 NDK_STAAC
58 PsiBlast_CBE 79.2244% -88 - C9 -3Q8U 6.0 NDK_STAAC
74 PsiBlast_CBE 78.2944% -81 - C9 -3NGU 5.7 ?
75 PsiBlast_CBE 77.6644% -79 - C9 -3NGU 8.0 ?
90 PsiBlast_CBE 77.6044% -79 - C9 -3NGS 1.8 ?
71 PsiBlast_CBE 77.3148% -79 - C9 -1ZS6 6.2 NDK3_HUMAN
123 HHSearch 76.5043% -81 - C9 -3EVO 5.0 NDK_MIMIV