@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1125: (2016-01-26 )
MRAVVELLAGARRLVIFTGAGVSAESGIPTFRDALGGLWARYDPAALATPAAFADDPALVWGWYEWRRLKVLGVQPNPAHRAIAALSGRIANTRLVTQNVDDLHERAGSRDVLHLHGSLHAPRCATCAAAYRDALPDSVEPEEGRRIEPPRCPACGGQVRPGVVWFGEALPEAALREAFAAACECDLLLSVGTSGVVQPAARIPGLALEHGASVVHVNPQPVRTRHPREHCLVGPAGEVLPELLRRAFPG

Atome Classification :

(50 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACE_D_15(5BTR)
?
[Raw transfer]




SVR_B_3(2NYR)
SIR5_HUMAN
[Raw transfer]




OAD_B_5(1M2N)
NPD1_ARCFU
[Raw transfer]




NX6_D_12(4UUA)
SIR5_DANRE
[Raw transfer]




EPE_B_7(4UUB)
SIR5_DANRE
[Raw transfer]




EPE_B_6(4UTV)
SIR5_DANRE
[Raw transfer]




OAD_B_5(1M2N)
NPD1_ARCFU
[Raw transfer]




APR_A_3(1M2J)
NPD1_ARCFU
[Raw transfer]




NAD_A_5(1ICI)
NPD1_ARCFU
[Raw transfer]




WOC_A_5(4UU8)
SIR5_DANRE
[Raw transfer]




NAD_A_5(1ICI)
NPD1_ARCFU
[Raw transfer]




EPE_B_5(4UTN)
SIR5_DANRE
[Raw transfer]




APR_A_3(1M2G)
NPD1_ARCFU
[Raw transfer]




CNA_A_6(4G1C)
SIR5_HUMAN
[Raw transfer]




NAD_A_5(1ICI)
NPD1_ARCFU
[Raw transfer]




APR_A_3(1M2H)
NPD1_ARCFU
[Raw transfer]




EPE_B_8(4UU8)
SIR5_DANRE
[Raw transfer]




3NP_C_12(4UTX)
SIR5_DANRE
[Raw transfer]




FSL_C_9(4UTV)
SIR5_DANRE
[Raw transfer]




NAD_B_6(1ICI)
NPD1_ARCFU
[Raw transfer]




EPE_B_11(4UU7)
SIR5_DANRE
[Raw transfer]




SVR_B_3(2NYR)
SIR5_HUMAN
[Raw transfer]




APR_A_3(1M2K)
NPD1_ARCFU
[Raw transfer]




APR_A_3(1M2K)
NPD1_ARCFU
[Raw transfer]




0L1_D_10(4UTZ)
SIR5_DANRE
[Raw transfer]




NAD_B_25(1YC2)
NPD2_ARCFU
[Raw transfer]




EPE_B_6(4UTZ)
SIR5_DANRE
[Raw transfer]




JO3_D_12(4UU7)
SIR5_DANRE
[Raw transfer]




EPE_B_7(4UUA)
SIR5_DANRE
[Raw transfer]




NAD_C_26(1YC2)
NPD2_ARCFU
[Raw transfer]




EPE_B_8(4UTX)
SIR5_DANRE
[Raw transfer]




SU8_D_11(4UUB)
SIR5_DANRE
[Raw transfer]




GUA_C_11(4UTR)
SIR5_DANRE
[Raw transfer]




NHE_B_8(3RIG)
SIR5_HUMAN
[Raw transfer]




NHE_A_6(3RIG)
SIR5_HUMAN
[Raw transfer]




APR_A_9(2B4Y)
SIR5_HUMAN
[Raw transfer]




EDO_B_10(4UU7)
SIR5_DANRE
[Raw transfer]




CHAIN_F_3(4HDA)
SIR5_HUMAN
[Raw transfer]

-

EDO_B_8(4UTN)
SIR5_DANRE
[Raw transfer]




CHAIN_B_2(1YC5)
NPD_THEMA
[Raw transfer]

-

CHAIN_C_3(3RIG)
SIR5_HUMAN
[Raw transfer]

-

CHAIN_F_3(4HDA)
SIR5_HUMAN
[Raw transfer]

-

CHAIN_D_4(3RIG)
SIR5_HUMAN
[Raw transfer]

-

CHAIN_C_3(4F4U)
SIR5_HUMAN
[Raw transfer]

-

CHAIN_D_4(4F56)
SIR5_HUMAN
[Raw transfer]

-

CHAIN_C_3(3RIY)
SIR5_HUMAN
[Raw transfer]

-

CHAIN_B_2(4TWI)
NPD1_ARCFU
[Raw transfer]

-

CHAIN_C_3(4F56)
SIR5_HUMAN
[Raw transfer]

-

CHAIN_D_4(3RIY)
SIR5_HUMAN
[Raw transfer]

-

CHAIN_D_3(4UU8)
SIR5_DANRE
[Raw transfer]

-

CHAIN_C_3(4UTX)
SIR5_DANRE
[Raw transfer]

-

CHAIN_E_4(4G1C)
SIR5_HUMAN
[Raw transfer]

-

CHAIN_C_3(4UTR)
SIR5_DANRE
[Raw transfer]

-

CHAIN_D_3(4UUB)
SIR5_DANRE
[Raw transfer]

-

CHAIN_D_3(4UTN)
SIR5_DANRE
[Raw transfer]

-

CHAIN_C_3(4UTV)
SIR5_DANRE
[Raw transfer]

-

CHAIN_D_3(4UTZ)
SIR5_DANRE
[Raw transfer]

-

CHAIN_D_4(3RIY)
SIR5_HUMAN
[Raw transfer]

-

CHAIN_D_3(4UUA)
SIR5_DANRE
[Raw transfer]

-

CHAIN_D_3(4UU7)
SIR5_DANRE
[Raw transfer]

-

CHAIN_B_2(1S5P)
NPD_ECOLI
[Raw transfer]

-

CHAIN_B_2(1S5P)
NPD_ECOLI
[Raw transfer]

-

32 PsiBlast_CBE 92.7441%-116 - C3 -3RIG 7.2 SIR5_HUMAN
1 PsiBlast_PDB 92.7448% -94 - C3 -1M2G 11.6 NPD1_ARCFU
94 Fugue 92.4446%-105 - C3 -1ICI 9.2 NPD1_ARCFU
34 PsiBlast_CBE 92.3041%-104 - C3 -4G1C 7.0 SIR5_HUMAN
3 PsiBlast_PDB 92.1948% -97 - C3 -4TWI 9.4 NPD1_ARCFU
11 PsiBlast_PDB 92.0441%-108 - C3 -3RIG 7.5 SIR5_HUMAN
93 Fugue 91.9547% -97 - C3 -1ICI 9.2 NPD1_ARCFU
5 PsiBlast_PDB 91.7748% -93 - C3 -1M2J 11.5 NPD1_ARCFU
12 PsiBlast_PDB 91.7341%-102 - C3 -3RIY 9.2 SIR5_HUMAN
33 PsiBlast_CBE 91.5541%-110 - C3 -2NYR 8.0 SIR5_HUMAN
4 PsiBlast_PDB 91.3948% -93 - C3 -1M2H 11.4 NPD1_ARCFU
18 PsiBlast_PDB 91.2741%-105 - C3 -2B4Y 5.6 SIR5_HUMAN
31 PsiBlast_CBE 91.0941%-100 - C3 -3RIY 8.4 SIR5_HUMAN
30 PsiBlast_CBE 91.0941%-104 - C3 -4F56 6.5 SIR5_HUMAN
15 PsiBlast_PDB 91.0741%-110 - C3 -2NYR 5.0 SIR5_HUMAN
14 PsiBlast_PDB 91.0441%-101 - C3 -4F56 6.4 SIR5_HUMAN
21 PsiBlast_CBE 90.6948% -94 - C3 -1ICI 9.1 NPD1_ARCFU
16 PsiBlast_PDB 90.6341%-101 - C3 -4G1C 10.5 SIR5_HUMAN
13 PsiBlast_PDB 90.4641%-107 - C3 -4F4U 8.3 SIR5_HUMAN
6 PsiBlast_PDB 90.4648% -92 - C3 -1M2K 11.5 NPD1_ARCFU
22 PsiBlast_CBE 90.2547% -95 - C3 -1M2N 8.6 NPD1_ARCFU
2 PsiBlast_PDB 90.1348% -94 - C3 -1ICI 9.2 NPD1_ARCFU
37 PsiBlast_CBE 89.8939%-108 - C3 -4UUB 6.4 SIR5_DANRE
102 HHSearch 89.5747% -98 * C3 *1M2K 11.4 NPD1_ARCFU
49 PsiBlast_CBE 89.3539%-105 - C3 -4UTV 5.7 SIR5_DANRE
20 PsiBlast_PDB 89.3439%-108 - C3 -4UTR 4.7 SIR5_DANRE
48 PsiBlast_CBE 89.2839%-104 - C3 -4UTV 3.0 SIR5_DANRE
51 PsiBlast_CBE 89.2539%-102 - C3 -4UTN 3.1 SIR5_DANRE
41 PsiBlast_CBE 88.9839%-104 - C3 -4UU8 6.9 SIR5_DANRE
19 PsiBlast_PDB 88.9839%-105 - C3 -4UTN 7.2 SIR5_DANRE
40 PsiBlast_CBE 88.8439%-103 - C3 -4UU8 3.1 SIR5_DANRE
43 PsiBlast_CBE 88.7039%-105 - C3 -4UU7 6.4 SIR5_DANRE
45 PsiBlast_CBE 88.5939%-104 - C3 -4UTZ 5.1 SIR5_DANRE
44 PsiBlast_CBE 88.5839%-101 - C3 -4UTZ 3.1 SIR5_DANRE
47 PsiBlast_CBE 88.4139%-105 - C3 -4UTX 6.4 SIR5_DANRE
46 PsiBlast_CBE 88.3339% -99 - C3 -4UTX 3.1 SIR5_DANRE
25 PsiBlast_CBE 88.2143%-100 - C3 -1YC2 7.4 NPD2_ARCFU
39 PsiBlast_CBE 88.1939%-103 - C3 -4UUA 6.2 SIR5_DANRE
42 PsiBlast_CBE 88.1139% -98 - C3 -4UU7 3.2 SIR5_DANRE
38 PsiBlast_CBE 88.0439% -97 - C3 -4UUA 2.7 SIR5_DANRE
17 PsiBlast_PDB 87.8641% -97 - C3 -4HDA 2.6 SIR5_HUMAN
36 PsiBlast_CBE 87.7939%-100 - C3 -4UUB 2.8 SIR5_DANRE
35 PsiBlast_CBE 87.7241% -97 - C3 -4HDA 5.6 SIR5_HUMAN
104 HHSearch 87.6641% -94 - C3 -3RIY 9.2 SIR5_HUMAN
26 PsiBlast_CBE 87.3243% -97 - C3 -1YC2 7.3 NPD2_ARCFU
7 PsiBlast_PDB 87.1747% -92 - C3 -1M2N 8.2 NPD1_ARCFU
52 PsiBlast_CBE 85.7140%-105 - C3 -1S5P 8.0 NPD_ECOLI
106 HHSearch 82.1940% -93 - C3 -1S5P 7.7 NPD_ECOLI
97 Fugue 80.9032%-101 - C3 -5BTR Error ?
103 HHSearch 75.4731% -94 - C3 -1YC5 7.4 NPD_THEMA