@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3001: (2016-02-12 )
MIPLIGQLYRNNNVVTSIHGRGLINRSVIAIMKAHRFARHRMADDAELSVHETFPILKAMSELKLGAASVDLGKMVAKFKAEGNGRSIEDFVKAELAEVVGKQNGDAREGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDLVKRASLLRRDSVHGPFDGTITIDEENNTLTANGNLIQVIYSNDPASIDYTQYGIKNALLVDNTGKWRDAEGLGQHLKCPGIDRVVLTAPGKGALKNIVHGINHTDIGADDKIISAASCTTNAIVPVLKAVNDQYGIVNGHVETVHSYTNDQNLIDNFHKGSRRGRSAPLNMVITETGAATAAAKALPVLKGKLTGNAIRVPTPNVSMAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVSSQEVVSTDFVGSRHAGVVDAEATICNDNRVVLYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_14(1NBO)
G3PA_SPIOL
[Raw transfer]



NAD_O_12(1NBO)
G3PA_SPIOL
[Raw transfer]



NAD_B_4(3L0D)
?
[Raw transfer]



NAD_A_13(1NBO)
G3PA_SPIOL
[Raw transfer]



NAD_A_3(4BOY)
?
[Raw transfer]



NAD_B_4(3CPS)
?
[Raw transfer]



NAD_A_3(3ZCX)
?
[Raw transfer]



NAD_A_3(3CPS)
?
[Raw transfer]



NDP_A_16(1RM3)
G3PA_SPIOL
[Raw transfer]



NDP_B_16(1RM5)
G3PA_SPIOL
[Raw transfer]



NDP_B_14(1RM4)
G3PA_SPIOL
[Raw transfer]



NAD_B_4(3ZCX)
?
[Raw transfer]



NDP_O_15(1RM3)
G3PA_SPIOL
[Raw transfer]



NAD_A_3(3CPS)
?
[Raw transfer]



NAD_A_3(3L0D)
?
[Raw transfer]



NDP_A_15(1RM5)
G3PA_SPIOL
[Raw transfer]



NDP_B_17(1RM3)
G3PA_SPIOL
[Raw transfer]



NAD_B_4(4BOY)
?
[Raw transfer]



NDP_A_13(1RM4)
G3PA_SPIOL
[Raw transfer]



NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]



NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]



NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_B_4(2EP7)
G3P_AQUAE
[Raw transfer]



NDP_O_14(1RM5)
G3PA_SPIOL
[Raw transfer]



NAD_A_3(3PYM)
G3P3_YEAST
[Raw transfer]



NAD_Q_15(1HDG)
G3P_THEMA
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]



NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]



NDP_Y_25(1JN0)
G3PA_SPIOL
[Raw transfer]



NAD_R_13(3GPD)
G3P_HUMAN
[Raw transfer]



BME_F_6(2I5P)
G3P1_KLUMA
[Raw transfer]



BME_E_5(2I5P)
G3P1_KLULA
[Raw transfer]



CHAIN_C_3(3ZDF)
?
[Raw transfer]
-
CHAIN_D_4(3ZDF)
?
[Raw transfer]
-
111 HHSearch 93.9837% -98 - C8 -3HJA - G3P_BORBU -
84 PsiBlast_CBE 93.2641% -86 - C8 -4O59 - G3P_BOVIN -
107 HHSearch 93.0536%-103 - C8 -2B4R - ? -
80 PsiBlast_CBE 93.0441% -86 - C8 -4O63 - G3P_BOVIN -
77 PsiBlast_CBE 92.7241% -87 - C8 -4O63 - G3P_BOVIN -
81 PsiBlast_CBE 92.7141% -87 - C8 -4O59 - G3P_BOVIN -
83 PsiBlast_CBE 92.6941% -89 - C8 -4O59 - G3P_BOVIN -
78 PsiBlast_CBE 92.6741% -88 - C8 -4O63 - G3P_BOVIN -
82 PsiBlast_CBE 92.5041% -85 - C8 -4O59 - G3P_BOVIN -
79 PsiBlast_CBE 92.4941% -86 - C8 -4O63 - G3P_BOVIN -
112 HHSearch 92.1140%-102 - C8 -1HDG 9.5 G3P_THEMA
121 HHSearch 91.9137%-102 - C8 -3V1Y - G3PC1_ORYSJ -
9 PsiBlast_PDB 91.8939%-101 - C8 -1RM3 8.7 G3PA_SPIOL
113 HHSearch 91.8039%-104 - C8 -3CPS 7.5 ?
109 HHSearch 91.5036%-102 - C8 -3DOC - ? -
38 PsiBlast_CBE 91.2139%-102 - C8 -1RM3 10.1 G3PA_SPIOL
122 HHSearch 90.6939% -98 - C8 -2D2I - ? -
93 PsiBlast_CBE 90.4536% -91 - C8 -4BOY 9.2 ?
11 PsiBlast_PDB 90.3939%-101 - C8 -1RM4 6.9 G3PA_SPIOL
115 HHSearch 90.3339% -96 - C8 -2EP7 9.6 G3P_AQUAE
45 PsiBlast_CBE 90.1839%-102 - C8 -1RM5 8.8 G3PA_SPIOL
37 PsiBlast_CBE 89.9339% -99 - C8 -1RM3 7.8 G3PA_SPIOL
96 PsiBlast_CBE 89.8636% -88 - C8 -3ZCX 9.0 ?
95 PsiBlast_CBE 89.7936% -92 - C8 -3ZDF 3.5 ?
14 PsiBlast_PDB 89.7739%-104 - C8 -1RM5 8.1 G3PA_SPIOL
94 PsiBlast_CBE 89.6636% -91 - C8 -3ZDF 5.7 ?
92 PsiBlast_CBE 89.6036% -89 - C8 -4BOY 9.0 ?
46 PsiBlast_CBE 89.5839%-102 - C8 -1RM5 7.2 G3PA_SPIOL
97 PsiBlast_CBE 89.5236% -89 - C8 -3ZCX 9.0 ?
42 PsiBlast_CBE 89.4239%-100 - C8 -1RM4 8.3 G3PA_SPIOL
43 PsiBlast_CBE 89.3439%-102 - C8 -1NBO 10.6 G3PA_SPIOL
116 HHSearch 89.2637%-102 - C8 -3PYM 7.3 G3P3_YEAST
41 PsiBlast_CBE 89.1339%-101 - C8 -1RM4 7.3 G3PA_SPIOL
120 HHSearch 88.9937% -93 - C8 -3H9E 7.8 G3PT_HUMAN
108 HHSearch 88.8938%-100 - C8 -1RM4 8.1 G3PA_SPIOL
85 PsiBlast_CBE 88.5939% -95 - C8 -1JN0 7.6 G3PA_SPIOL
10 PsiBlast_PDB 88.5639%-101 - C8 -1NBO 10.2 G3PA_SPIOL
44 PsiBlast_CBE 88.1939%-100 - C8 -1NBO 9.3 G3PA_SPIOL
128 Fugue 87.8739% -93 - C8 -3GPD 5.6 G3P_HUMAN
21 PsiBlast_CBE 87.4239% -97 - C8 -1HDG 8.4 G3P_THEMA
101 PsiBlast_CBE 87.2038% -96 - C8 -2I5P 2.6 G3P1_KLULA (first)
100 PsiBlast_CBE 86.9538% -96 - C8 -2I5P 2.6 G3P1_KLUMA
1 PsiBlast_PDB 86.7039% -97 - C8 -1HDG 8.7 G3P_THEMA
99 PsiBlast_CBE 84.3637% -89 - C8 -3L0D 8.9 ?
98 PsiBlast_CBE 83.2737% -88 - C8 -3L0D 8.2 ?
6 PsiBlast_PDB 82.7039% -82 - C8 -3CPS 8.1 ?
30 PsiBlast_CBE 82.3639% -82 - C8 -3CPS 7.8 ?
22 PsiBlast_CBE 81.5538% -74 - C8 -2EP7 9.4 G3P_AQUAE
2 PsiBlast_PDB 81.0638% -74 - C8 -2EP7 9.4 G3P_AQUAE