@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0012: (2015-12-18 )
MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPDLTQLPTGSVVTGQVQDLPIDAPILQMEVVRVDAEGVGLRFLSEA
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------.........10...--.----...--.--20---......----------..30.---.......40-...------------.-.-----...50....-....60------.--.--.--.---..---..70-------------------......------.--------.----80.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------MDNQRQYPRTP
L
K
C
--
R
----
I
R
I--S--H
P
---
L
F
G
E
L
M
----------
A
Q
TRD---LSDT
G
V
Y
V
K-HPD------------L-T-----QLPTG
S
V
VT-GQVQDL------P--I--D--A---P
I
---
L
Q
M
E
-------------------
V
V
R
VDA------E--------G----V
G
L
R
FLSEA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
83.82
23%
-80
- C5 -
2RDE
1
?
A:
[132-224]
-------------------------------------------------------------------------------------------------------------
S
Q
L
R
K
E
P
R
F
E
L
N
L
--
A
----
G
K
V
--
L
--
F
D
---
E
H
-
R
G
D
----------
C
E
L
R
D
---
L
S
R
S
G
C
R
F
I
-
T
P
P
------------
L
-
G
K
----
T
Y
Q
V
G
D
L
V
A
-
L
E
I
F
-
S
------
D
LR
G
TK
T
--
F
---
P
P
---
L
T
G
K
-------------------
I
C
N
L
Q
R
------
S
LH
H
A
----
R
----
Y
G
L
E
F
N
E
E
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
82.97
20%
-82
- C5 -
3KYF
4
YCGR_PSEPK
A:
[113-213]
-------------------------------------------------------------------------------------------------------------
H
Q
R
R
N
A
F
R
A
A
L
K
L
--
S
----
Q
L
V
D
I
I
L
D
G
A
HLK
G
N
G
A
M
R
----------
G
K
L
L
D
---
I
S
A
T
G
C
K
L
R
-
F
E
G
------------
N
-
V
ED---
R
L
Q
L
G
Q
V
Y
E
R
F
K
A
G
-
N
------
P
--
L
--
G
--
L
---
V
D
---
T
M
V
E
-------------------
L
R
H
L
H
Y
E
ERIN
T
T
--------
F
----
A
G
V
R
F
H
N
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
75.77
19%
-107
- C5 -
1YLN
-
YCGRL_VIBCH
A:
[23-248]
T
V
S
T
I
N
S
T
D
A
L
A
M
VEHS
E
L
T
L
SITTPVG
T
K
F
V
C
R
T
P
F
IGTHTDK
F
L
L
V
E
MPKIS
A
D
D
L
Q
Y
FFQEG
F
W
M
N
I
R
A
I
S
PRGE
G
A
L
I
H
F
R
S
Q
LMHILQEP
V
P
M
A
F
L
S
I
P
N
T
M
Q
V
S
Q
L
R
K
E
P
R
F
E
L
N
L
--
A
----
G
K
V
--
L
--
F
D
---
E
-
H
R
G
D
----------
C
E
L
R
D
---
L
S
R
S
G
C
R
F
I
T
P
P
L
------------
G
-
K
-----
T
Y
Q
V
G
D
L
V
A
-
L
E
I
F
S
D
------
L
--
R
--
G
--
T
---
K
T
FPP
L
T
G
K
-------------------
I
C
N
L
Q
R
------
S
--------
L
H
H
A
R
Y
G
L
E
F
N
E
E
G
R
N
N
A
K
N
L
L
A
Q
LKFNGTKLTLNA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
73.76
13%
-116
- C5 -
1YWU
-
CDGBP_PSEAE
A:
[6-90]
-------------------------------------------------------------------------------------------------------------
D
E
R
R
R
F
H
R
I
A
F
D
A
--
D
----
S
E
I
--
L
--
Q
G
---
E
-
R
R
W
E
----------
V
L
L
H
D
---
V
S
L
H
G
I
L
V
G
-
Q
P
Q
------------
D
-
W
-----
N
G
D
P
Q
R
P
F
E
-
A
R
L
Y
-
L
------
G
L-
D
--
V
--
L
---
I
R
---
M
E
I
S
-------------------
L
A
W
A
R
D
------
G
--------
L
----
L
G
F
E
C
Q
H
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
72.14
11%
-105
* C5 *
1YWU
-
CDGBP_PSEAE
A:
[1-125]
--------------------------------------------------------------------------------------------------------MSDQ
H
D
E
R
R
R
F
H
R
I
A
F
D
A
--
D
----
S
E
I
--
L
--
Q
G
----
E
R
R
W
E
----------
V
L
L
H
D
---
V
S
L
H
G
I
L
V
G
-
Q
P
Q
------------
D
-
W
-----
N
G
D
P
Q
R
P
F
E
-
A
R
L
Y
L
G
------
L
--
D
--
V
--
L
---
I
R
---
M
E
I
S
-------------------
L
A
W
A
R
D
------
G
--------
L
----
L
G
F
E
C
Q
H
I
D
L
D
S
I
S
H
L
R
R
L
V
E
L
N
LGDEELLERELALLVSAHDD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
68.94
22%
-81
- C5 -
3PH1
1
?
A:
[98-164]
-------------------------------------------------------------------------------------------------------------------------------------------------
R
L
A
----------
L
G
T
V
H
---
W
S
V
R
G
I
R
L
A
-
S
P
H
--------------------
A
H
P
P
G
T
T
G
S
-
V
L
L
Q
-
P
------
S
--
D
--
W
--
L
P
E
L
L
Q
---
L
P
A
D
-------------------
V
L
A
S
A
S
D
G
Q
Q
--
H
--------
W
----
L
W
L
R
F
A
P
L
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
60.16
18%
-95
- C3 -
1QUN
-
FIMH_ECOLI
B:
[159-279]
-----------------------------------------------------------------------------------------------
G
G
C
D
V
S
A
RDVTVT
L
P
D
Y
P
G
S
V
P
I
P
L
T
V
--
Y
C
A
K
S
Q
N
L
--
G
--
Y
Y
---
L
S
G
T
T
A
DAGNS
I
F
T
N
T
A
S
F
S
P
---
A
Q
G
V
G
V
Q
L
T
-
R
N
G
--------------
T
-----
I
I
P
A
N
N
T
V
S
L
G
A
V
G
T
S
------
A
--
V
--
S
--
L
---
G
----
L
T
A
N
-------------------
Y
A
R
T
G
G
------
Q
V
T
A
G
N
V
Q
S
I
----
I
G
V
T
F
V
Y
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
51.33
20%
-57
- C4 -
3BT3
-
?
A:
[134-264]
------------------------------------------------------------------------------------------------------------
E
R
G
Y
V
V
R
E
N
G
P
V
Y
F
T
K
D
----
M
D
K
--
T
--
V
K
---
W
F
E
E
I
L
G
W
S
G
D
-----
I
V
A
R
D
DEG
F
G
D
Y
G
C
V
F
D
-
Y
P
S
EVAVAHPFR
G
F
H
L
-
F
-----
K
G
E
P
I
K
G
V
A
-
G
F
M
M
I
E
------
G
--
I
--
D
--
A
---
L
H
---
K
Y
V
K
E
N
GWDQIS
D
I
Y
T
Q
PW
G
A
R
E
C
S
I
T
T
T
------
D
--------
G
----
C
I
L
R
F
F
E
S
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
50.36
16%
-54
- C5 -
3CNR
-
?
A:
[9-90]
-----------------------------------------------------------------------------------------------------------------------
G
I
L
--
S
----
L
A
L
--
K
--
D
K
---
P
-
A
L
Y
S
----------
A
Y
M
P
F
---
V
K
G
G
G
I
F
V
P
-
T
P
K
--------------------
R
Y
M
L
G
D
E
V
F
-
L
L
L
T
-
L
------
P
--
D
--
S
S
E
R
---
L
P
---
V
A
G
K
-------------------
V
I
W
T
T
P
AA----
A
--------
G
----
I
G
V
Q
F
P
D
G
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
44.74
26%
56
- C6 -
3WFS
2
?
C:
[23-388]
----------------------------LNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEPTIASVVLHL
P
P
Y
R
Y
R
F
D
F
S
P
L
K
G
--
K
-----
D
L
--
E
--
K
A
---
L
I
E
D
L
------------
K
E
R
D
---
F
T
A
N
A
I
A
V
N
-
L
D
D
------------
V
-
L
-----
T
I
V
Y
D
P
--
T
-
G
G
I
K
D
L
EQGLLR
P
--
V
--
S
--
I
---
E
N
---
L
K
R
D
-------------------
P
V
R
V
L
R
---------------------
G
F
R
I
A
I
E
K
NLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKDPLDEHTLKTLEYLEQVIEDRAKYLSAELLENFGKKRVLGEFTDVELLKWGALFHDIGKPQTTFYEHDKVGAQIVREIGERLRWGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMK
25
Fugue
43.41
34%
-69
* C6 *
1XC0
-
PAP4_PARMA
A:
[1-33]
-------------------------------------------------------------------------------------------------------------------
G
F
F
A
L
I
P
--
K
----
I
-
I
--
S
--
S
P
---
L
F
K
T
L
L
----------
S
A
V
G
S
A
--
L
S
S
S
G
G
Q
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
42.61
16%
-103
- C5 -
3ZJA
1
?
A:
[80-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
V
---
F
K
S
G
G
N
H
L
M
-
F
E
K
------------
L
K
Q
-----
Q
P
K
Q
G
Q
S
V
A
-
V
E
L
H
-
F
------
A
--
H
S-
D
--
P
---
V
A
---
V
K
L
P
-------------------
V
K
A
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
41.76
19%
-48
- C6 -
1GCC
2
A:
[1-63]
----------------------------------------------------------------------------------------------------------------
K
H
Y
R
G
--------------
V
--
R
--
Q
R
---
P
W
G
K
F
A
----------
A
E
I
R
D
---
P
A
K
N
G
--------------------------------
A
R
V
W
L
-
G
T
F
E
T
A
------
E
--
D
--
A
--
A
---
L
A
---
Y
D
R
A
-------------------
A
F
R
M
R
G
------
S
--------
R
----
A
L
L
N
F
P
L
R
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
40.84
36%
-95
- C1 -
2L8D
-
LBR_CHICK
A:
[10-20]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
D
G
E
V
V
M
-
G
R
W
P
G
S
------
V
--
L
--
Y
--
Y
---
E
V
---
Q
V
T
S
-------------------
Y
D
D
A
S
H
------
L
--------
Y
----
T
V
K
Y
K
D
G
T
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
39.62
15%
-64
- C5 -
2L1T
-
?
A:
[29-88]
------------------------------------------------------------------------------------------------------------------------------------------------
G
S
F
D
G
T
--------
A
A
I
T
S
---
L
K
G
S
L
A
W
L
E
-
L
F
G
------------
A
-
E
Q
P
P
P
N
T
L
S
E
G
A
E
V
S
-
V
S
V
W
-
T
------
G
--
G
--
A
--
L
---
C
R
---
C
D
G
R
-------------------
V
E
T
L
R
D
------
D
--------
R
----
Q
F
A
I
R
L
V
G
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
39.31
11%
-92
- C5 -
2DIG
-
LBR_HUMAN
A:
[12-49]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
A
D
G
E
V
V
R
-
G
R
W
P
-
G
------
S
--
S
--
L
--
Y
---
Y
E
---
V
E
I
L
-------------------
S
H
D
S
T
S
------
Q
--------
L
----
Y
T
V
K
Y
K
D
G
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
38.79
16%
-101
- C5 -
2K6W
-
?
A:
[73-117]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
V
E
---
L
K
P
G
G
Y
H
F
M
-
L
L
G
------------
L
K
R
-----
P
L
K
A
G
E
E
V
E
-
L
D
L
L
-
F
------
A
--
G
G
-
K
--
V
---
L
K
---
V
V
L
P
-------------------
V
E
A
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
33.96
34%
-49
- C2 -
4Q9D
-
?
A:
[85-122]
-----------------------------------------------------------------------------------------------------------------------
L
V
A
--
A
----
Y
R
A
--
N
--
T
P
---
L
I
I
T
A
G
----------
Q
Q
T
R
E
---
M
S
V
V
D
P
Y
L
N
-
N
P
D
------------
A
-
T
-----
T
M
P
K
P
W
V
K
W
-
S
Y
E
P
A
R
------
A
--
E
--
D
--
V
---
P
A
---
A
F
M
Q
-------------------
A
Y
A
V
A
M
------
Q
--------
P
----
P
M
G
P
V
F
L
S
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
30.75
35%
-37
- C5 -
1QP2
-
PSAE_NOSS8
A:
[19-42]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
D
V
G
T
-------------------
V
A
S
V
D
Q
------
S
--------
G
IKYP
V
I
V
R
F
E
K
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
23.01
17%
-14
- C6 -
1JB0
3
PSAJ_THEEB
J:
[1-41]
------------------------------------------------------------------------------------------------------------
M
K
H
F
L
T
Y
L
S
T
A
P
V
L
--
A
----
A
I
W
--
M
--
T
I
---
T
A
G
I
L
I
----------
E
F
N
R
F
---
Y
P
D
L
L
F
H
P
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------