@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4043: (2016-02-23 )
MIAAYQARCQARVDAALDALFVAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLADTRRNPQEHAVCLEMLTRLARAAGSAGMVGGQAIDLGSVGVALDQAALEVMHRHKTGALIEASVRLGALASGRAEPASLAALERYAEAIGLAFQVQDDILDVESDTATLGKTQGKDQAHNKPTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLARYIVERRN

Atome Classification :

(57 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIS_B_12(1RQJ)
ISPA_ECOLI
[Raw transfer]




RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]




RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]




IPE_A_4(4LLT)
?
[Raw transfer]




GPP_D_9(3KRP)
?
[Raw transfer]




DST_D_11(3KRF)
?
[Raw transfer]




GST_A_4(4LLS)
?
[Raw transfer]




DST_A_10(1RQI)
ISPA_ECOLI
[Raw transfer]




DST_D_6(3OAC)
?
[Raw transfer]




IPE_B_9(4LLT)
?
[Raw transfer]




IPE_A_6(3PDE)
?
[Raw transfer]




IPE_D_24(3Q1O)
?
[Raw transfer]




IPE_B_13(3PDE)
?
[Raw transfer]




DST_D_11(3KRO)
?
[Raw transfer]




IPE_C_18(3Q1O)
?
[Raw transfer]




IPE_A_6(3PDE)
?
[Raw transfer]




DST_D_11(3OAB)
?
[Raw transfer]




IPE_B_7(3OYR)
?
[Raw transfer]




GRG_A_3(2J1P)
GGPPS_SINAL
[Raw transfer]




GRG_A_3(2J1P)
GGPPS_SINAL
[Raw transfer]




DST_B_9(1RQI)
ISPA_ECOLI
[Raw transfer]




GST_B_9(4LLS)
?
[Raw transfer]




IPE_B_13(3Q1O)
?
[Raw transfer]




IPE_A_7(3Q1O)
?
[Raw transfer]




IPE_D_22(3PDE)
?
[Raw transfer]




IPE_C_15(3PDE)
?
[Raw transfer]




DST_A_6(3OAB)
?
[Raw transfer]




GOL_C_16(3M9U)
?
[Raw transfer]




GOL_B_5(4F62)
?
[Raw transfer]




2DE_D_13(3AQC)
HEXB_MICLU
[Raw transfer]




IPE_A_5(3PDE)
?
[Raw transfer]




2DE_B_8(3AQC)
HEXB_MICLU
[Raw transfer]




IPE_D_7(3KRC)
?
[Raw transfer]




IPE_D_19(3PDE)
?
[Raw transfer]




IPR_B_11(1RQJ)
ISPA_ECOLI
[Raw transfer]




IPE_B_7(4LFE)
?
[Raw transfer]




DMA_B_12(4GP2)
?
[Raw transfer]




PPV_A_6(3KRF)
?
[Raw transfer]




PPV_A_5(3KRP)
?
[Raw transfer]




IPE_A_4(4LFG)
?
[Raw transfer]




IPE_B_9(4LFG)
?
[Raw transfer]




DMA_A_6(4GP2)
?
[Raw transfer]




IPE_A_2(3Q2Q)
?
[Raw transfer]




PPV_A_6(3KRO)
?
[Raw transfer]




DMS_B_13(3ZOU)
?
[Raw transfer]




PPV_A_3(3NPK)
?
[Raw transfer]




DMA_A_3(4GP1)
?
[Raw transfer]




POP_A_3(3OYR)
?
[Raw transfer]




1 PsiBlast_PDB 98.34100%-113 - C1 -3ZMB - ? -
21 PsiBlast_CBE 97.68100%-114 - C1 -3ZOU 3.6 ?
22 PsiBlast_CBE 96.24100%-112 - C1 -3ZMB - ? -
85 HHSearch 91.1277%-103 - C1 -3LSN - ? -
3 PsiBlast_PDB 89.9074%-104 - C1 -3LSN - ? -
84 HHSearch 81.3759%-101 - C1 -3TS7 - ? -
23 PsiBlast_CBE 80.7358% -98 - C1 -3TS7 - ? -
4 PsiBlast_PDB 79.6558%-101 - C1 -3TS7 - ? -
10 PsiBlast_PDB 77.5249%-100 - C1 -3KRO 3.0 ?
41 PsiBlast_CBE 77.3543% -95 - C1 -3PDE 3.2 ?
45 PsiBlast_CBE 77.1543% -90 - C1 -3M9U - ? -
9 PsiBlast_PDB 77.0449%-100 - C1 -3KRF 3.3 ?
43 PsiBlast_CBE 76.9543% -92 - C1 -3M9U 2.3 ?
8 PsiBlast_PDB 76.9449%-100 - C1 -3KRC - ? -
42 PsiBlast_CBE 76.8143% -91 - C1 -3PDE 5.1 ?
44 PsiBlast_CBE 76.7143% -94 - C1 -3M9U - ? -
5 PsiBlast_PDB 76.6651%-107 - C1 -4F62 - ? -
40 PsiBlast_CBE 76.5143% -92 - C1 -3PDE 3.4 ?
12 PsiBlast_PDB 76.2449%-101 - C1 -3OAB 2.6 ?
13 PsiBlast_PDB 76.0649% -99 - C1 -3OAC - ? -
11 PsiBlast_PDB 75.8049%-100 - C1 -3KRP 3.4 ?
39 PsiBlast_CBE 75.7943% -91 * C1 *3PDE 5.1 ?
89 HHSearch 75.3152% -77 - C1 -1RQJ 5.5 ISPA_ECOLI
30 PsiBlast_CBE 75.2049% -98 - C1 -3KRC 3.7 ?
34 PsiBlast_CBE 75.0351% -78 - C1 -1RQI 3.9 ISPA_ECOLI
26 PsiBlast_CBE 74.8649% -82 - C1 -3OAB 2.7 ?
25 PsiBlast_CBE 74.7349% -81 - C1 -3OAC 2.8 ?
94 HHSearch 74.7145%-100 - C1 -2J1P 7.0 GGPPS_SINAL
27 PsiBlast_CBE 74.6649% -97 - C1 -3KRP 4.5 ?
29 PsiBlast_CBE 74.5049% -83 - C1 -3KRF 3.2 ?
33 PsiBlast_CBE 74.3151% -76 - C1 -1RQJ 5.4 ISPA_ECOLI
28 PsiBlast_CBE 73.7549% -83 - C1 -3KRO 3.1 ?
18 PsiBlast_PDB 73.2642%-101 - C1 -2J1P 7.0 GGPPS_SINAL
16 PsiBlast_PDB 72.3651% -77 - C1 -1RQI 3.4 ISPA_ECOLI
15 PsiBlast_PDB 72.3551% -77 - C1 -1RQJ 5.5 ISPA_ECOLI
86 HHSearch 72.3142% -92 - C1 -3PDE 3.3 ?
24 PsiBlast_CBE 71.5851%-110 - C1 -4F62 1.8 ?
37 PsiBlast_CBE 62.5443% -80 - C1 -4LLT 3.8 ?
38 PsiBlast_CBE 61.3243% -81 - C1 -4LLS 5.2 ?
36 PsiBlast_CBE 60.6343% -80 - C1 -4LLT 3.4 ?
101 HHSearch 60.4834%-106 - C1 -3OYR 3.4 ?
20 PsiBlast_PDB 60.3743% -78 - C1 -4LLS 5.7 ?
98 HHSearch 54.5932% -81 - C1 -3NPK 3.5 ?
47 PsiBlast_CBE 54.3143% -68 - C1 -4LFG 5.4 ?
48 PsiBlast_CBE 53.6543% -68 - C1 -4LFE 5.2 ?
54 PsiBlast_CBE 53.6439% -72 - C1 -3Q1O 3.9 ?
46 PsiBlast_CBE 53.5343% -70 - C1 -4LFG 5.2 ?
55 PsiBlast_CBE 53.4339% -72 - C1 -3Q1O 4.0 ?
56 PsiBlast_CBE 53.2939% -70 - C1 -3Q1O 4.1 ?
53 PsiBlast_CBE 53.0039% -69 - C1 -3Q1O 3.9 ?
63 PsiBlast_CBE 45.1932% -65 - C1 -3AQC 4.2 HEXB_MICLU
64 PsiBlast_CBE 39.6232% -60 - C1 -3AQC 3.3 HEXB_MICLU
73 PsiBlast_CBE 36.4336% -70 - C1 -3OYR 3.4 ?
69 PsiBlast_CBE 30.4738% -57 - C1 -4GP1 4.5 ?
67 PsiBlast_CBE 30.3738% -56 - C1 -4GP2 4.8 ?
68 PsiBlast_CBE 30.0738% -55 - C1 -4GP2 3.7 ?
74 PsiBlast_CBE 28.6434% -61 - C1 -3Q2Q 2.3 ?