@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0237: (2016-04-20 )
MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAADAQAVVTNYHVGGILIGSDTDLTIFDGALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQTRTVQQVRDLARDRGRQMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTPPLDDLVGDDLVPYRTLVTQAPVGVMVGHLQVPGLTGSEPASLSKAAVNLLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALWVTTKEVPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDG_B_5(4GVF)
NAGZ_SALTY
[Raw transfer]



NDG_A_3(4GVF)
NAGZ_SALTY
[Raw transfer]



1BW_A_3(4HZM)
NAGZ_SALTY
[Raw transfer]



1BW_B_4(4HZM)
NAGZ_SALTY
[Raw transfer]



NAG_B_7(4GVI)
NAGZ_SALTY
[Raw transfer]



NAG_B_7(4GNV)
?
[Raw transfer]



NAG_B_2(1Y65)
NAGZ_VIBCH
[Raw transfer]



NAG_A_3(4GNV)
?
[Raw transfer]



0XY_B_5(4GVH)
NAGZ_SALTY
[Raw transfer]



0XY_A_3(4GVH)
NAGZ_SALTY
[Raw transfer]



OAN_A_2(2OXN)
NAGZ_VIBCH
[Raw transfer]



BA4_A_2(3GS6)
NAGZ_VIBCH
[Raw transfer]



VPU_A_2(3GSM)
NAGZ_VIBCH
[Raw transfer]



GOL_A_4(3GSM)
NAGZ_VIBCH
[Raw transfer]



FMT_A_7(4YYF)
?
[Raw transfer]



FMT_A_7(4YYF)
?
[Raw transfer]



ACY_A_3(3SQL)
?
[Raw transfer]



SUGAR_A_3(4GYK)
NAGZ_BACSU
[Raw transfer]
-
MUB_A_4(4GYJ)
NAGZ_BACSU
[Raw transfer]



MES_A_3(4GVG)
NAGZ_SALTY
[Raw transfer]



ACY_A_9(3SQL)
?
[Raw transfer]



AH0_B_5(4GVI)
NAGZ_SALTY
[Raw transfer]
60 Fugue 85.2530% -80 - C2 -4ZM6 - ? -
43 HHSearch 81.3229% -83 - C2 -4ZM6 - ? -
37 HHSearch 80.9831% -73 * C2 *3BMX - NAGZ_BACSU -
23 PsiBlast_CBE 80.5143% -94 - C2 -5IOB - ? -
5 PsiBlast_PDB 79.6530% -70 - C2 -4GYJ 3.2 NAGZ_BACSU
4 PsiBlast_PDB 79.4930% -76 - C2 -3NVD - NAGZ_BACSU -
58 Fugue 79.1926% -73 - C2 -3BMX - NAGZ_BACSU -
6 PsiBlast_PDB 79.1830% -72 - C2 -4GYK 3.8 NAGZ_BACSU
22 PsiBlast_CBE 78.6443% -90 - C2 -5IOB - ? -
3 PsiBlast_PDB 78.6430% -73 - C2 -3BMX - NAGZ_BACSU -
21 PsiBlast_CBE 78.1743% -96 - C2 -5IOB - ? -
41 HHSearch 78.0930% -89 - C2 -5BZA - ? -
8 PsiBlast_PDB 77.8430% -90 - C2 -5BZA - ? -
45 HHSearch 77.2129% -84 - C2 -3WO8 - ? -
25 PsiBlast_CBE 76.9331% -78 - C2 -3LK6 - NAGZ_BACSU -
26 PsiBlast_CBE 76.6831% -78 - C2 -3LK6 - NAGZ_BACSU -
7 PsiBlast_PDB 76.5131% -78 - C2 -3LK6 - NAGZ_BACSU -
9 PsiBlast_PDB 76.4630% -76 - C2 -4ZM6 - ? -
24 PsiBlast_CBE 76.3031% -78 - C2 -3LK6 - NAGZ_BACSU -
39 HHSearch 74.8427% -73 - C2 -3SQL - ? -
1 PsiBlast_PDB 70.7367% -0 - C2 -4YYF 2.8 ?
36 HHSearch 70.6370% -0 - C2 -4YYF 2.8 ?
34 PsiBlast_CBE 66.2831% -62 - C2 -1Y65 3.1 NAGZ_VIBCH
35 PsiBlast_CBE 65.0431% -67 - C2 -2OXN 3.7 NAGZ_VIBCH
14 PsiBlast_PDB 64.2031% -52 - C2 -3SQL 3.5 ?
12 PsiBlast_PDB 61.9435% -68 - C2 -4GVH 3.7 NAGZ_SALTY
11 PsiBlast_PDB 61.5235% -70 - C2 -4GVG 3.0 NAGZ_SALTY
30 PsiBlast_CBE 61.4535% -72 - C2 -4GVF 3.2 NAGZ_SALTY
13 PsiBlast_PDB 61.0435% -72 - C2 -4HZM 3.8 NAGZ_SALTY
10 PsiBlast_PDB 60.8135% -66 - C2 -4GVF 3.3 NAGZ_SALTY
28 PsiBlast_CBE 60.6535% -72 - C2 -4GVH 3.8 NAGZ_SALTY
27 PsiBlast_CBE 60.3835% -71 - C2 -4HZM 3.7 NAGZ_SALTY
31 PsiBlast_CBE 59.6235% -68 - C2 -4GVI 3.1 NAGZ_SALTY
33 PsiBlast_CBE 50.3835% -40 - C2 -4GNV 3.5 ?
18 PsiBlast_PDB 49.7935% -40 - C2 -4GNV 3.6 ?